PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06646g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 234aa MW: 26843.7 Da PI: 6.6089

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06646g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.9	3.1e-22	102	157	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Niben101Scf06646g00002.1 102 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 157 7999************************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-24	85	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.46E-21	90	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.091	99	159	IPR001356	Homeobox domain
SMART	SM00389	3.2E-19	101	163	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-19	102	157	IPR001356	Homeobox domain
CDD	cd00086	4.43E-17	106	157	No hit	No description
PRINTS	PR00031	4.5E-5	130	139	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	134	157	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.5E-5	139	155	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGVVDMSNNH PPSHETKDFF PSPALSLSLA GIFGDGGNVE TEEVEDGSAS RGRLREESTV 60 EISSENSGPL RSRGSYDDFE HDDITCNEEE EDPNNNSKKK KRKKYHRHTA EQIREMEALF 120 KESPHPDEKQ RQQLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHENSLLKA EIEKLREENK 180 GLRKTLKNPS CPNCGFTISS NNDAPTLPAE EHQLRIENAR LKAEVINLNT NRYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	102	KKKKRK
2	97	103	KKKKRKK
3	99	103	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224885.1	1e-149	PREDICTED: homeobox-leucine zipper protein GLABRA 2 isoform X1
Swissprot	P46607	7e-71	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A314KUI7	1e-148	A0A314KUI7_NICAT; Homeobox-leucine zipper protein glabra 2
STRING	XP_009778213.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	7e-69	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]