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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf06560g01004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
MIKC_MADS |
Protein Properties |
Length: 238aa MW: 27338.1 Da PI: 9.9878 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf06560g01004.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.7 | 7.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
Niben101Scf06560g01004.1 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59
79***********************************************96 PP
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2 | K-box | 72 | 1.8e-24 | 97 | 162 | 34 | 99 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++ h+ G+dL++Lsl++Lq+Leqq++++lk+iRs+Kn+l++e+i elqkkek+lqe+n+ ++kkl+
Niben101Scf06560g01004.1 97 KLMHYTGQDLDPLSLRDLQSLEQQIDTALKRIRSRKNQLMHESIYELQKKEKALQEQNNLMTKKLK 162
56799********************************************************99987 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.651 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.97E-33 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 4.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.392 | 77 | 167 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-19 | 100 | 161 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE 60 SSMESILERY ERYSYAERKL NANDSNPMEN WILEYPKLMH YTGQDLDPLS LRDLQSLEQQ 120 IDTALKRIRS RKNQLMHESI YELQKKEKAL QEQNNLMTKK LKDIDKKQSG QTQLTSGQNS 180 ATFMLPQQPP PQSHQLPNLT IGGPFEATRV RNTDGGQAHY GSNSLIPPWM IRHVNNDG
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |