PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf06441g01029.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 316aa MW: 34297.7 Da PI: 6.4415

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06441g01029.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	6e-33	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Niben101Scf06441g01029.1 39 KPRLRWTADLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.661	36	96	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-31	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-16	39	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-8	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-14	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MFPRLIQPPG EDEYNMNIGI HHTHNINGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG 60 GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGKLSQKD LGEASKDGLT ATYSLESPCS 120 GGTPQQVPAS DLNEGYEVKE ALRAQMEVQS KLHLQVEAEK HLQIRQDSEQ RYIIMLEKAC 180 KMLADQFIGG VVTENGQETC QGLGTRTQVT PLCNPLGLCP SESADLVGVH GPEEVSPRIH 240 PQFTDCSTES CLTSHESPAG LPLEGTSTGG KKRGPNGDST HASVVWGEAD MISSGVRLLQ 300 VNHFGITSSN VQNVSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802388.1	0.0	PREDICTED: uncharacterized protein LOC104247930 isoform X1
Refseq	XP_016438721.1	0.0	PREDICTED: uncharacterized protein LOC107764626 isoform X1
TrEMBL	A0A1S3XFE8	0.0	A0A1S3XFE8_TOBAC; uncharacterized protein LOC107764626 isoform X1
TrEMBL	A0A1U7YGX3	0.0	A0A1U7YGX3_NICSY; uncharacterized protein LOC104247930 isoform X1
STRING	XP_009802388.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-68	G2-like family protein