PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf06435g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 120aa MW: 13713.9 Da PI: 8.4871

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06435g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.6	7.2e-37	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk lrr+C+ +C++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d+++sl eA +r++dPvyG+vg+++ l++ Niben101Scf06435g02004.1 5 RCAACKQLRRRCPLNCIFLPYFPPNNPQRFSYVHRIYGASNVGKMLQQVQEHQRADVADSLHLEAYCRIKDPVYGCVGIVTLLHE 89 6********************************************************************************** PP DUF260 86 qleqlkaelallkeel 101 ++ +++ +la++++e+ Niben101Scf06435g02004.1 90 EIYHVQCQLAKVQAEI 105 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.386	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-36	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MTSSRCAACK QLRRRCPLNC IFLPYFPPNN PQRFSYVHRI YGASNVGKML QQVQEHQRAD 60 VADSLHLEAY CRIKDPVYGC VGIVTLLHEE IYHVQCQLAK VQAEINLLKA QGQVQGELQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	2	116	8	121	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	2	116	8	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798305.1	9e-81	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_016455407.1	9e-81	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	4e-45	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1S3YTT8	2e-79	A0A1S3YTT8_TOBAC; LOB domain-containing protein 24-like
TrEMBL	A0A1U7YHK4	2e-79	A0A1U7YHK4_NICSY; LOB domain-containing protein 24-like
STRING	XP_009798305.1	4e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-47	LOB domain-containing protein 24