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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf06408g02001.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Trihelix |
| Protein Properties |
Length: 215aa MW: 25816.5 Da PI: 8.0048 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf06408g02001.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 68.3 | 1.6e-21 | 2 | 72 | 13 | 86 |
trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+r em++++ ++k++k lWe ++ km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l
Niben101Scf06408g02001.1 2 IRGEMDQNFMETKRNKLLWEVIATKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEAEA--L-RQQFPLYNELA 72
799******************************************************95..3.45799999986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MIRGEMDQNF METKRNKLLW EVIATKMKEK GYNRSAEQCK CKWKNLVTRY KGCETMEAEA 60
LRQQFPLYNE LAAIFMDRML RMEAEEDEND EDSEGEKDSN KKKRKLKGNT GSSSNVSSGN 120
LVGNLKEILD EFMKKQMEME MQLQKEYERR EEERKIKEME WRQKMGALQN ERLMMEKIWR 180
EREEQWKMRK EGRAEKRDAL ITALLNKLRS EDASD
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
