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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06397g04009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 492aa MW: 54103.9 Da PI: 9.6547 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 68 | 88 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Niben101Scf06397g04009.1 68 CEICNKGFQRDQNLQLHRRGH 88 *******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Niben101Scf06397g04009.1 143 WKCEKCSKKYAVQSDWKAHTKTC 165 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.26E-7 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 89 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 131 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.26E-7 | 138 | 163 | No hit | No description |
SMART | SM00355 | 130 | 143 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MMSGDVFSVP SSVKGAVLPH HPQDVLLEPN PNPKANSSSK KRRNLPDPDA EVIALSPKTL 60 MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKQ EIVKKKVYIC PEKSCVHNDP 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR 180 KDSFITHRAF CDALAEESAR ITSVGTCNNL NFNQQPNLVG GISQIGTGFA QDFSGMTSGN 240 SLHHQQQKPR LSLWLNQANN NSQLNNPLHM STPSSNLFAS SSSTGLPDHM VQMQSPNNVF 300 GNQMQWAIDK NTVAPTPATS MTETLSSMYS DNQNQHPKSS TPMSATALLQ KAAQIGSTKS 360 SPAFFTNAFG VMNSSSSSSN TQMFNTLPQT TGEMHQVFAK QSEDYNPTNN GLINGCPNMS 420 SSANTKAINL DQAIMQTVGM QTQAVSFNLD NSLTRDFLGM GNEGGRPFLP QELAKFASMT 480 STMGLSHYSS GH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-38 | 139 | 204 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 3e-38 | 139 | 204 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781292.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like isoform X2 | ||||
Refseq | XP_016463820.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like isoform X2 | ||||
TrEMBL | A0A1S3ZH97 | 0.0 | A0A1S3ZH97_TOBAC; zinc finger protein JACKDAW-like isoform X2 | ||||
TrEMBL | A0A1U7WMW1 | 0.0 | A0A1U7WMW1_NICSY; zinc finger protein JACKDAW-like isoform X2 | ||||
STRING | XP_009781290.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03150.1 | 1e-104 | C2H2-like zinc finger protein |