PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf06397g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

S1Fa-like

Protein Properties

Length: 87aa MW: 9623.4 Da PI: 10.3062

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06397g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	132.3	1.2e-41	21	87	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + ve+kG+nPGlivl vvggl+l fl+gny+ly+yaqk+lPP+kkkPvskkk+kre+lkqGv++PGe Niben101Scf06397g02002.1 21 KDVEVKGFNPGLIVLTVVGGLVLAFLIGNYVLYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 87 679***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	2.0E-6	22	87	No hit	No description
Pfam	PF04689	4.9E-40	23	87	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MESEADFDPP PSFDNVKNMA KDVEVKGFNP GLIVLTVVGG LVLAFLIGNY VLYMYAQKTL 60 PPKKKKPVSK KKMKRERLKQ GVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009627553.1	6e-56	PREDICTED: DNA-binding protein S1FA-like
Refseq	XP_016471310.1	6e-56	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q42337	4e-15	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A1S4A3X3	1e-54	A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like
STRING	XP_009627553.1	2e-55	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	1e-06	S1FA-like DNA-binding protein