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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06392g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 81aa MW: 9347.22 Da PI: 11.1194 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 92.5 | 3.4e-29 | 29 | 81 | 18 | 70 |
S1FA 18 llvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +l vgglllvfl gny+ly+yaq +lPP+kkkPvskkk +re+lkqGv++PGe Niben101Scf06392g01011.1 29 MLNVGGLLLVFLAGNYLLYIYAQETLPPKKKKPVSKKKPRRERLKQGVSAPGE 81 5789************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 6.0E-5 | 16 | 81 | No hit | No description |
Pfam | PF04689 | 6.3E-28 | 29 | 81 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MDINLSYILQ NPNRKVKLEF PNRKIRPKML NVGGLLLVFL AGNYLLYIYA QETLPPKKKK 60 PVSKKKPRRE RLKQGVSAPG E |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 6e-19 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 6e-19 | DNA-binding protein S1FA | ||||
TrEMBL | W9SCA3 | 1e-17 | W9SCA3_9ROSA; DNA-binding protein S1FA1 | ||||
STRING | XP_010104121.1 | 2e-18 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53370.1 | 4e-07 | S1FA-like DNA-binding protein |