PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06387g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 390aa MW: 43379.9 Da PI: 4.3895 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 207.4 | 7.9e-64 | 144 | 386 | 1 | 253 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.f 84 lv+ L++c +av+ ++l+la++l+ ++e+ +++ +m+++a+yf+ AL +r+++ +l ++++ s ++ +++++ + Niben101Scf06387g01001.1 144 LVKILMACGKAVQRNNLNLADSLVRLIREQTASQFGAMKKVATYFADALDQRIQG--MNLEDIMEFSCYRD-------NVMQMrL 219 6789***************************************************..45555555555442.......2223339 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 +e+ P+l+f++ taN+aIl+a+++++rvHiiDf+++qG QW+aL+ +a Rp+gpp +R+ g+gsp+ +++++++++++L++f Niben101Scf06387g01001.1 220 HEIRPYLEFAYSTANRAILDAFANSSRVHIIDFSLNQGPQWLALMLDFALRPGGPPAIRLIGIGSPD--NTDAIRQLKWKLTEFS 302 9****************************************************************76..9*************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns 250 + +gv+fef +++++l+d+++++L++++ E +aVn++++lh+ll ++++e+ vL+ +k++ Pk+v+++e a+h + Niben101Scf06387g01001.1 303 DIFGVEFEFCGIMVDSLADVHTSRLDIRQsnYEEVAVNSIFELHHLLYTPGEIEK----VLNSIKEMHPKIVTIIEATASHlpRD 383 ***************************99989***************99999999....******************99986555 PP GRAS 251 esF 253 e+F Niben101Scf06387g01001.1 384 EKF 386 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.239 | 118 | 390 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-61 | 144 | 386 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSSGNLSTDT FMEDGESFVS NTDAVINGIS DISDLTLSLI SDPNIPNSSD SSTSIDDYLQ 60 QISTAAYGCD DMIVSSGATF RKFNSSPDFR VFSRNNINAI CNNYSDKVAE EGSAESSNRM 120 RSEDGLELCL GLSIGSEVVN EELLVKILMA CGKAVQRNNL NLADSLVRLI REQTASQFGA 180 MKKVATYFAD ALDQRIQGMN LEDIMEFSCY RDNVMQMRLH EIRPYLEFAY STANRAILDA 240 FANSSRVHII DFSLNQGPQW LALMLDFALR PGGPPAIRLI GIGSPDNTDA IRQLKWKLTE 300 FSDIFGVEFE FCGIMVDSLA DVHTSRLDIR QSNYEEVAVN SIFELHHLLY TPGEIEKVLN 360 SIKEMHPKIV TIIEATASHL PRDEKFPSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-30 | 151 | 379 | 26 | 255 | Protein SCARECROW |
5b3h_A | 7e-30 | 151 | 379 | 25 | 254 | Protein SCARECROW |
5b3h_D | 7e-30 | 151 | 379 | 25 | 254 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019241513.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 1e-86 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1J6K2Q1 | 0.0 | A0A1J6K2Q1_NICAT; Della protein gai | ||||
STRING | XP_009788345.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16964 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 8e-74 | GRAS family protein |
Publications ? help Back to Top | |||
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