PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06348g00036.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 553aa    MW: 62183.7 Da    PI: 5.0065
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06348g00036.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94.1e-27161214155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r++Wtp++H++F++a++qL G+ekA+Pk+i+e+m+ +gLt+ehv+SHLQkYR+
  Niben101Scf06348g00036.1 161 KQRVVWTPKMHQNFLQAIQQL-GHEKAVPKKIVEIMNEPGLTREHVASHLQKYRM 214
                               79*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-27159218IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18160218IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25161214IPR006447Myb domain, plants
PfamPF002496.9E-6163213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDIQGITANS SLGKSTPYSS DIGTKKTCIL LVLDDITCHN IVSDLLHNQT YEVMSPDDTR  60
YENQAQDCSV AAYVVNISDT NEMNKLWQMA LEKEKGRKAV VNQEENDDNN ATRLPQNVTE  120
TNTENTSSAD YDVRAHDVKG KRKAYSDTNE ENGENRDIEK KQRVVWTPKM HQNFLQAIQQ  180
LGHEKAVPKK IVEIMNEPGL TREHVASHLQ KYRMCLKRAQ ESSDASIYDQ ILTNDAKEKC  240
FQVQPYLSSL NVNATRGYSR STQQPFQTHF QQGTGGMNLR QPQMVSFPIM VSFQQQNSFL  300
DFANSRQAEY KSGLIEQQTT CFPRVAHNSN FRVYSDKRKN MLFSIQSGNA NQPTNSNSGL  360
DFIGFRLSSD GKSVNFGHKG SSSAVISSNT AYSGLCSSMS EDYIHKQKPS PPFLETPNEN  420
TLIQYSSAPP ENLAIFNHPS NSISEQQNLL PFDNAANKIT CQSPEMHVSF IPQEQLSAQQ  480
SSGDLEDYSA ILFGDEVSVP PLENSGNYDS RQQLYSVPEL PQEFNNLGTE IDIKSLLETT  540
ENRSSQLFWE EGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17159218362ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480490.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S4AV910.0A0A1S4AV91_TOBAC; two-component response regulator ARR12-like
STRINGXP_009598455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.26e-24response regulator 1