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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06332g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 582aa MW: 64997.3 Da PI: 6.2436 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 411.8 | 6.1e-126 | 212 | 581 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL++cA+a+++++l + l+++ + ++s +gdp+qRl ay++e+L ar s++++y++l+++e + + l+++++++ Niben101Scf06332g02001.1 212 LRQLLIACARALAENKLDDFEVLVTKARSTVSITGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILY 293 689***************************************************9**************9...99********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 e++P+lkf++++aN aI ea +e+ vHiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + + l ++++rL+ + Niben101Scf06332g02001.1 294 EICPYLKFGYMAANGAIAEACRSENYVHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVEKRLSAI 378 *****************************************************************999999************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 e++++ +efn+ v +++ +L+v+pgEa+ Vn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n++sF Niben101Scf06332g02001.1 379 SEKFNIAVEFNA-VPVFAPEVTKAMLDVRPGEAVTVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTASF 462 ************.688889999*************************************************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 + rfleal+yy a+f+s++++l+r+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ ++ Niben101Scf06332g02001.1 463 FPRFLEALDYYHAMFESIDVTLARDRKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFRQYPLSSYVNSVIR 547 ************************************************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+r+++ + y++ e++g+++lgWk+r+L+s+SaW Niben101Scf06332g02001.1 548 DLMRRYS-EHYTLVEKDGAMLLGWKERNLISASAW 581 *******.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.765 | 186 | 563 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-123 | 212 | 581 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MDAHHFYDYG VTGSDLSYSS YPTISSLPNR LSGTSKFDSE YSPISPLANY LDSETFTTLS 60 DCQEQHSSTE NLSGASSSSN SSLDYNNYFH RPSPSPDCLP EGLLVFSGGN AALQNVVHSR 120 NMQHTLLQLE SALMGPDEEV TKSSPSYGGN KASQTSNQRS RAWTNESKVL NQNETQRSQI 180 SLFTKSGNGI LSQERDKVLY NLPLHGVPSS NLRQLLIACA RALAENKLDD FEVLVTKARS 240 TVSITGDPIQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK 300 FGYMAANGAI AEACRSENYV HIIDFQIAQG TQWMTLLQAL AARPGGAPYV RITGIDDPVS 360 QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VTVNFPLQLH 420 HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA SFFPRFLEAL DYYHAMFESI 480 DVTLARDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKSRFMM AGFRQYPLSS 540 YVNSVIRDLM RRYSEHYTLV EKDGAMLLGW KERNLISASA WY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-63 | 209 | 581 | 1 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794690.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_016450028.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A1S3YDF5 | 0.0 | A0A1S3YDF5_TOBAC; scarecrow-like protein 21 | ||||
TrEMBL | A0A1U7Y794 | 0.0 | A0A1U7Y794_NICSY; scarecrow-like protein 21 | ||||
STRING | XP_009794690.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-177 | GRAS family protein |
Publications ? help Back to Top | |||
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