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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf06286g01010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 299aa MW: 34259.2 Da PI: 5.6508 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf06286g01010.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.8 | 1.5e-17 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +L++ lgL+ rq+ +WFqNrRa++k
Niben101Scf06286g01010.1 86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLSRALGLQPRQIAIWFQNRRARWK 139
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.9 | 2.1e-41 | 85 | 177 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
ekkrrl+ eqvk+LE++Fe +kLeperK++l+r+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+en++L+++++
Niben101Scf06286g01010.1 85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLSRALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRQFEAIKAENDALQSQNQ 169
69*********************************************************************************** PP
HD-ZIP_I/II 86 eLreelke 93
+L++e+++
Niben101Scf06286g01010.1 170 KLHAEVMA 177
***99875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MTCTNEMDFF PANFMLQTSH EDEHQPSTSL TPILPSFSPQ DFHGIASFLG KRSMAFSGME 60
ANNNNCEENH NGEDDLSDDG SQAGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLSRAL 120
GLQPRQIAIW FQNRRARWKT KQLEKDYEIL KRQFEAIKAE NDALQSQNQK LHAEVMALKN 180
RDQPTESINL NKETEGSCSN RSENSSEIKL DISRTPAIDS PLSTHHPITS RPFFPPSIRP 240
NNNGVAQLFN MNPNSISRPD LKLMDQNSTV KEESSLSNMF CGIDDQTAFW PWLEQQHFN
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 133 | 141 | RRARWKTKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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