PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06249g04003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 493aa MW: 53797.9 Da PI: 6.5943

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06249g04003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	148	208	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Niben101Scf06249g04003.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	145	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	150	206	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	152	206	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	154	190	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MRQVKDPEIK LFGKKIALPE NGKMLSVIVS GENSGVEKPS GAKEISSGWD RDPCLVDKET 60 SSPDESDDGS EYENEKTDKD QVTRELTEDT SEEKDQDQVT KESENPKSPS ESENKPKTPP 120 IDDESPTVKS SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMVKPNG 240 TVLSFGPDSP LCESMASVMN LAEKKTPNGI RNGYYKPEHK NPSCIGGENG DDCSSGSSVT 300 TNSTAEGVKN RPPEAVMQTI NGFPSPVPCL PGVPWPFPYA AVPFPAINPA AFPMPFCPPP 360 YWNCNVPGPW SIPWLAPPSS TTNQNGSGSS PNSPLGKHSR DGDLLRPNNP EGQKKSEGSV 420 LVPKTLRIDD PDEAAKSSIW STLGINYDSF SRGGFFKGFQ PKSSEKDHPA TSSPVLQANP 480 VAFSRSLSFQ ERA

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MRQVKDPEIK LFGKKIALPE NGKMLSVIVS GENSGVEKPS GAKEISSGWD RDPCLVDKET  60
SSPDESDDGS EYENEKTDKD QVTRELTEDT SEEKDQDQVT KESENPKSPS ESENKPKTPP  120
IDDESPTVKS SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK  180
SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMVKPNG  240
TVLSFGPDSP LCESMASVMN LAEKKTPNGI RNGYYKPEHK NPSCIGGENG DDCSSGSSVT  300
TNSTAEGVKN RPPEAVMQTI NGFPSPVPCL PGVPWPFPYA AVPFPAINPA AFPMPFCPPP  360
YWNCNVPGPW SIPWLAPPSS TTNQNGSGSS PNSPLGKHSR DGDLLRPNNP EGQKKSEGSV  420
LVPKTLRIDD PDEAAKSSIW STLGINYDSF SRGGFFKGFQ PKSSEKDHPA TSSPVLQANP  480
VAFSRSLSFQ ERA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619973.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1S3XZF9	0.0	A0A1S3XZF9_TOBAC; cyclic dof factor 1-like
STRING	XP_009619973.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-96	cycling DOF factor 3