![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf06186g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 791aa MW: 86841.1 Da PI: 6.7406 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 183.8 | 1.2e-56 | 279 | 502 | 3 | 231 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qRl+ay++ AL++r++ + p+ e +s+e++ +++ ++ev Niben101Scf06186g01007.1 279 QSITEAATAISEGINHVAVEILTRLSQVSNVRGSSTQRLTAYMVSALRSRVNP----TDYPPPVLEL---HSKEHTVSTQNLYEV 356 67899***********************************************9....2222333333...599999999****** PP GRAS 88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169 sP++k+++++aN aIleav + +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++ g ++l+++g L+ +A Niben101Scf06186g01007.1 357 SPCFKLGFMAANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVELKAVA 441 *********************9999***********************77737777*********8888**************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 +++gv + fnv +a +++dl+ e+L ++p+EalaVn++++l+r +desv++e+ rde+L+ v Niben101Scf06186g01007.1 442 NKIGVCLYFNV-MACKITDLSREKLGLEPDEALAVNFAFKLYRQPDESVTMENLRDELLRRV 502 **********9.7999*******************************************987 PP | |||||||
2 | GRAS | 297.8 | 2.8e-91 | 498 | 791 | 83 | 373 |
GRAS 83 lfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetger 164 l+ vsP++k+++++aN aIleav + +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++ g ++l+++g Niben101Scf06186g01007.1 498 LLRRVSPCFKLGFMAANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVE 582 6789**********************9999***********************77737777*********8888*********** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L+ +A+++gv + fnv +a +++dl+ e+L ++p+EalaVn++++l+r +desv++e+ rde+L+ vk+lsPkvv+vveqe++ n Niben101Scf06186g01007.1 583 LKAVANKIGVCLYFNV-MACKITDLSREKLGLEPDEALAVNFAFKLYRQPDESVTTENLRDELLRRVKGLSPKVVTVVEQELNGN 666 ***************9.7999**************************************************************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 +++Fl+r+ ea+ yy alfdsl+a+++r++ er+ +E+ l+r+ n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a Niben101Scf06186g01007.1 667 TAPFLARVNEACGYYGALFDSLDATVSRDNLERVRIEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVA 750 ***************************************.******************************************999 PP GRAS 335 kqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ + l+ + g++v+e+sg +++gW++r+L+++SaW Niben101Scf06186g01007.1 751 NSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAW 791 9887777654437999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.357 | 251 | 770 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-89 | 498 | 791 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 791 aa Download sequence Send to blast |
MSSGFPGDFY GAGGINTGRS TMNNNPLRSQ LSGILPDPAT QIVLGKSNLM GKRSLAEFQQ 60 QQQFQFLQQQ QQQNQQQQMI LQQQQQQQGL GFYLRNVKPR NYQQASMDFS AAAAAASSIS 120 SEFSSFSSNS NASTMNTRHT LPVLQQLRSQ PGLPLANTNI SGFLHPGTQN YSTGVHNRAT 180 IGQELLSQES EKKMMNQLQE LEKQLLDDND DDEGDTVSVV TNNEWSETIQ NLISPCQSQN 240 QNQNQNQNQN QKLASLSPSS STSSCASSTE SPPISCPKQS ITEAATAISE GINHVAVEIL 300 TRLSQVSNVR GSSTQRLTAY MVSALRSRVN PTDYPPPVLE LHSKEHTVST QNLYEVSPCF 360 KLGFMAANLA ILEAVTDHPT NKIHVIDFDV GQGGQYLHLL HALAAKKSEK PAVLKITAFT 420 EQVGGVDDRL NSIGVELKAV ANKIGVCLYF NVMACKITDL SREKLGLEPD EALAVNFAFK 480 LYRQPDESVT MENLRDELLR RVSPCFKLGF MAANLAILEA VTDHPTNKIH VIDFDVGQGG 540 QYLHLLHALA AKKSEKPAVL KITAFTEQVG GVDDRLNSIG VELKAVANKI GVCLYFNVMA 600 CKITDLSREK LGLEPDEALA VNFAFKLYRQ PDESVTTENL RDELLRRVKG LSPKVVTVVE 660 QELNGNTAPF LARVNEACGY YGALFDSLDA TVSRDNLERV RIEEGLSRKM ANSVACEGRD 720 RVERCEVFGK WRARMSMAGF VQRPMSQLVA NSLCSKLNSG TRGNPGFTVN EQSGGICFGW 780 MGRTLTVASA W |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-37 | 274 | 791 | 9 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469679.1 | 0.0 | PREDICTED: scarecrow-like protein 8 isoform X2 | ||||
Swissprot | Q9FYR7 | 1e-112 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A1S3ZZA2 | 0.0 | A0A1S3ZZA2_TOBAC; scarecrow-like protein 8 isoform X2 | ||||
STRING | XP_009787242.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-109 | SCARECROW-like 8 |