PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06133g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 431aa    MW: 47236.1 Da    PI: 9.3553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06133g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06628123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k F r  nL+ H r H
  Niben101Scf06133g00014.1  6 FVCEVCNKGFQREQNLQLHRRGH 28
                              89*******************88 PP
2zf-C2H214.40.0001182104123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC++C+k +  +s+ k H +t+
  Niben101Scf06133g00014.1  82 YKCEKCSKKYAVQSDWKAHSKTC 104
                               9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-8528No hitNo description
PROSITE profilePS5015711.094628IPR007087Zinc finger, C2H2
SMARTSM003550.0041628IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-670103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-877102No hitNo description
SMARTSM003557582102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KYKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  120
DSFITHRAFC DALAQESARN PPSLSSIGSH LYGSSNNMSL GLSKMGSQIS DHSNSTGILH  180
FGSSSNIKTG AQFNHNNLMG TTSIGASGFR PSTSFFLPAD QTNHQDYAAN KPSIHGLMQL  240
PDLHNNGNNN SSPSVASMFN LNFFQNSNNN SENVGSHGNS NISAGGGGLL LPSHQFSNSS  300
GDGSNNSSNM FSAGSILGTD HHISSSIPSL YVVNAYGNND QNQQNDYGNN FEQQPPQKKQ  360
MINNFSMENM GTEQANRLTR DFLGVGEIVR SMSGGFGSSH RDQQQMSTLD SKAALPPQSH  420
HQSFGGAGNF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3378139364Zinc finger protein JACKDAW
5b3h_F1e-3378139364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482768.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
TrEMBLA0A1S4B1V60.0A0A1S4B1V6_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X2
STRINGXP_009786293.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-91indeterminate(ID)-domain 5