PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06123g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 697aa    MW: 76678.6 Da    PI: 6.9888
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06123g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122223199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Niben101Scf06123g07001.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGD 204
                               89****************************996555555..89****************************************** PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Niben101Scf06123g07001.1 205 SIVFL--RAENGDLCVGIRRA 223
                               *****..4488999****997 PP
2Auxin_resp112.34.6e-37289372183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+++++Fev+Y+Prast+eF++k++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Niben101Scf06123g07001.1 289 AASFAASEQPFEVIYYPRASTPEFCIKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVVDPMRWPDSPWRLLQ 372
                               6778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-38113226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29115225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-21121222No hitNo description
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PfamPF023628.8E-22122223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF065075.9E-32289372IPR010525Auxin response factor
PROSITE profilePS5174520.253609689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MITFMDPKDK VKEIDKCLDS QLWHACAGSM VQMPPISSKV FYFPQGHSEH ACGNVDFRSS  60
NIRIPSYVPC KVSAIKYMAD PETDEVFAKI RLIPVSRNEV EFDDDGAVGM NGSDNQDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPA  240
GGNCMVPYGG FSSFLREDEN KLMRNGGNGN SSGNLMNRGK VKAESVVEAA SFAASEQPFE  300
VIYYPRASTP EFCIKASLVK SALQIRWCSG MRFKMPFETE DSSRISWFMG TISSVQVVDP  360
MRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD  420
FPLDGHHLPM PAFSGNHLLG PSSPFGCLPD NTPAGMQGAR HAQYGLSLSD IHLNKLHSSL  480
FPVGFPPLDQ AAANPRPSNS PMIRKPCNSE NISCLLTMGN STHDTTKKSD IGKAPQLVLF  540
GKPILTEQQI SLSCSGDTVS TVRTGNSSSD GNADKIGNVS DGSGSALNQR GLTESSPRDT  600
FQSEPNTEIG HCKVFMDSED VGRTLDLSSI GSYEELCRKL TNMFGIENSE ILSHVLYRDI  660
TGTVKQLGDE PYSDFIRTAR RLTILTDSSS DNVGLRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-81839341388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230355.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A314KJD00.0A0A314KJD0_NICAT; Auxin response factor
STRINGXP_009786798.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]