PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06091g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 275aa MW: 30269.5 Da PI: 8.6882

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06091g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Niben101Scf06091g01010.1 102 FSCNYCQRKFYSSQALGGHQNAH 124 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.14E-6	98	130	No hit	No description
PROSITE profile	PS50157	11.427	102	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKFPTSDNSC TSLKVEAPFL SPTTVLSNYQ NKWLSKQKME SQTTEEMSQI QTTDEQENND 60 LILDLSLCNT DHGSKSNLQT SSSSDLNSRG NNNTNETEPR VFSCNYCQRK FYSSQALGGH 120 QNAHKRERTM AKRGQKISST ATNFGYDKYS SMVSLPLHGS FNGSLGIQVH SMIHKPSSTP 180 FGAPLYGHPG WSIRRPIDQQ PAIGRLAPPD CYSNTTYNGG TSSGGGAARF DNNIQKFPTV 240 VDGISAYRWD SGGGPHVSKS NNQEELKKLD LSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464755.1	1e-174	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A1S3ZJR7	1e-172	A0A1S3ZJR7_TOBAC; zinc finger protein 3-like
STRING	XP_009623268.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	4e-39	zinc finger protein 3