PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06065g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 386aa    MW: 43897.7 Da    PI: 9.6136
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06065g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-3177130255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               prlrWtpeLH rF++a+e+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Niben101Scf06065g00001.1  77 PRLRWTPELHLRFIHAIERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130
                               8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2973131IPR009057Homeodomain-like
PROSITE profilePS5129412.65373133IPR017930Myb domain
SuperFamilySSF466891.24E-1574132IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2277132IPR006447Myb domain, plants
PfamPF002491.3E-978129IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MKRGSSAEDS KSSPKNQIEF EEEEEEEEEK EDDLETEENS KLPKGTRTSS SNSTVEENGK  60
KSTSSGGVRQ YVRSKTPRLR WTPELHLRFI HAIERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQIS MDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS  180
LWNRQANSSM YNPYNINIGG ASSINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH  240
NQRFWSTQIG TSSTKQNLLM KLPIDRDRDR GSDQEIMKTQ MRTNNSLSSR GKGWTTEAGT  300
ITRTTITTSA PKKRKIQDSE VNLDLKLSLK ITREDDDDHK KRLKAEEVGN LLSLSLFSSS  360
TTSMDDQENN VGEKNTRMAS TLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791664.10.0PREDICTED: uncharacterized protein LOC104238869 isoform X2
TrEMBLA0A1U7XXG30.0A0A1U7XXG3_NICSY; uncharacterized protein LOC104238869 isoform X2
STRINGXP_009791663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-47G2-like family protein