PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06065g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 386aa MW: 43897.7 Da PI: 9.6136 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1e-31 | 77 | 130 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++a+e+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Niben101Scf06065g00001.1 77 PRLRWTPELHLRFIHAIERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 73 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.653 | 73 | 133 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-15 | 74 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-22 | 77 | 132 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 78 | 129 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MKRGSSAEDS KSSPKNQIEF EEEEEEEEEK EDDLETEENS KLPKGTRTSS SNSTVEENGK 60 KSTSSGGVRQ YVRSKTPRLR WTPELHLRFI HAIERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKTDDPNQIS MDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS 180 LWNRQANSSM YNPYNINIGG ASSINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH 240 NQRFWSTQIG TSSTKQNLLM KLPIDRDRDR GSDQEIMKTQ MRTNNSLSSR GKGWTTEAGT 300 ITRTTITTSA PKKRKIQDSE VNLDLKLSLK ITREDDDDHK KRLKAEEVGN LLSLSLFSSS 360 TTSMDDQENN VGEKNTRMAS TLDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791664.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238869 isoform X2 | ||||
TrEMBL | A0A1U7XXG3 | 0.0 | A0A1U7XXG3_NICSY; uncharacterized protein LOC104238869 isoform X2 | ||||
STRING | XP_009791663.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8573 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-47 | G2-like family protein |