PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06023g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20590.2 Da PI: 9.375 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.7 | 1e-10 | 2 | 127 | 18 | 128 |
NAM 18 yLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeekewy.fFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 +L + ++g++++ + + ++vd+y k e w++ + + e++ y +F+++ kk++ + r +r + ++g+Wk+ k k v+ Niben101Scf06023g00003.1 2 FLLRFIAGQEMHDAGFiTTNVDVYgKQESWEIYDlgvpCGDDEDSTSYrYFITKLKKKS-NARYHRsVGNKGTWKQDNKGKLVHY 85 78888889997776773566799844589999633454333344444424444444444.5677775888*********999999 PP NAM 95 k......kgel..vglkktLvfykg..rapkgektdWvmheyrl 128 k + + +g k+ L + ++ ++ + +W+m+ey+l Niben101Scf06023g00003.1 86 KnlgkssS--VvnIGSKTNLSYKNKefYPEDQKDGHWLMKEYEL 127 87765433..155*********95532455666789******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.986 | 1 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-10 | 2 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-7 | 39 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MFLLRFIAGQ EMHDAGFITT NVDVYGKQES WEIYDLGVPC GDDEDSTSYR YFITKLKKKS 60 NARYHRSVGN KGTWKQDNKG KLVHYKNLGK SSSVVNIGSK TNLSYKNKEF YPEDQKDGHW 120 LMKEYELSKV ILHKFDQDRR DYVLCAIKKL KHVNSSSETS TITTLNNVSK GTDEVTGSVG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512401.1 | 1e-113 | PREDICTED: protein NTM1-like 9, partial | ||||
TrEMBL | A0A1S4DGC1 | 1e-111 | A0A1S4DGC1_TOBAC; protein NTM1-like 9 | ||||
STRING | XP_009774958.1 | 1e-112 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-06 | NAC domain containing protein 47 |