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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf06008g01006.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
TCP |
Protein Properties |
Length: 327aa MW: 36593.6 Da PI: 7.4296 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf06008g01006.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 95 | 1.5e-29 | 52 | 151 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85
g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++ ++ + ++++ a+n
Niben101Scf06008g01006.1 52 GGKDRHSKVCTIRGLRDRRIRLSLPTAIQLYDLQDRLGLNQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqfQ-DDHHFDAANL 135
78*************************************************************77777555321.2222222211 PP
TCP 86 ssg............k 89
+++ +
Niben101Scf06008g01006.1 136 REKskvidtdtvygkN 151
1112333343333221 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MINSSGNSFQ AKQESGGTNN SKLTSKATTS TSSRQWGGFK NPRIVRVSRT FGGKDRHSKV 60 CTIRGLRDRR IRLSLPTAIQ LYDLQDRLGL NQPSKVVDWL IEATKHEIDK LPPLQIPPGY 120 FAQFQDDHHF DAANLREKSK VIDTDTVYGK NKSIASNEQE NQEEIGGYVP QISAQSFFPL 180 GNRSPNLPGL MNNSMPFNSY YPWEPNSSLS LAHFGQHQTE ESSQNNFPLS LASSLSLPSG 240 SQLYYNPTAT TFSPMISPYM TNYTIGNDPR AQLNHFHFLS SSSQHILPNP PVSTLNLIKP 300 FSLNDDPRWI HSREDDVDSQ PHEGGDN
|
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 2e-46 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |