PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf05962g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 151aa MW: 17256 Da PI: 10.1262

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05962g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.3	1.3e-10	15	55	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+ ++k+ ++ +s+ ++ + K A LS+LC++++a+iifs Niben101Scf05962g00002.1 15 KFLKDKRAEKIALSNKQKALSKRAMDLSILCGIDIAIIIFS 55 567899999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.895	7	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-5	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-12	9	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-8	18	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-5	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-5	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MARMTSQMKS KSEKKFLKDK RAEKIALSNK QKALSKRAMD LSILCGIDIA IIIFSIVTGP 60 FFFGNPNVES VVRQFSQAKQ SFSRRMTHEK TGGGEENDTM KKKKKKTINE EEKGESALQI 120 FEPTTLVRLE KLKQEIDELE KDLAEKIDEL Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772696.1	9e-80	PREDICTED: agamous-like MADS-box protein AGL61, partial
TrEMBL	A0A1U7W663	2e-78	A0A1U7W663_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009772696.1	3e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-10	AGAMOUS-like 61