PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05960g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SAP
Protein Properties Length: 443aa    MW: 49485.6 Da    PI: 6.4586
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05960g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP688.67.6e-210844318455
                       SAP  18 ggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWr 102
                                ++ g+ ++ge  ++s+sr+ra ++vwpePf+e +a  va+dasrs+Grlaaa+al     vcstw+avs sdllwq+ltrriW+
  Niben101Scf05960g00004.1   8 PSSLGGLGGGEEPSSSRSRRRAGHDVWPEPFVEDFALLVATDASRSIGRLAAAQAL----SVCSTWQAVSHSDLLWQNLTRRIWN 88 
                               223334445677789999*************************************9....59*********************** PP

                       SAP 103 rtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvd....edndadalsCrclalsdkylaaGfadGavrlfdletrlhv 183
                               r +llr+ Wreeyiy+h+ta+nf + ry+y tl+f   ++d    ++n+ d+l Cr+lalsd++la+Gf+dG+v+lf l trlh+
  Niben101Scf05960g00004.1  89 RHYLLRQSWREEYIYWHQTANNFLHHRYTYNTLHFVAENNDnddnNNNNVDSLFCRRLALSDNHLAVGFSDGSVQLFYLPTRLHL 173
                               ***********************************87655411114466789********************************* PP

                       SAP 184 stflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGra 268
                               stf+p+hrdrlGrfsravsGiv+s  +lvfa+ldGdihvavi    aa++rra+lGdvvndGalvdf+G+++WwvGlyaGvpGra
  Niben101Scf05960g00004.1 174 STFHPRHRDRLGRFSRAVSGIVLSYVQLVFASLDGDIHVAVIGD--AAPPRRAHLGDVVNDGALVDFTGCDQWWVGLYAGVPGRA 256
                               ******************************************99..78************************************* PP

                       SAP 269 fhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldas 353
                               fhiW+ eteel fvGG ltdPe++mGWh+lte+telvGr+r t ++tavaCtsl+++v+dl+nqg+++r + +rrGliv+s+da 
  Niben101Scf05960g00004.1 257 FHIWNKETEELLFVGGELTDPESLMGWHLLTEVTELVGRIRATTQDTAVACTSLQIMVIDLQNQGIIIRGQPFRRGLIVASFDAR 341
                               ************************************************************************************* PP

                       SAP 354 neayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrh 437
                               ne++v+vdsrGva+vrr+++lee+crf+vrg  qrg++gC+nggyal+++g v+rvWei++ + ylys+rer+g++na++ad+r+
  Niben101Scf05960g00004.1 342 NETLVAVDSRGVASVRRADDLEEICRFNVRGaNQRGIVGCMNGGYALMWIGNVIRVWEIQHGV-YLYSIRERIGDINAIIADERY 425
                               *******************************99****************************88.********************* PP

                       SAP 438 vavsssdgtihlldfgaq 455
                               +a++s d+tihlldfgaq
  Niben101Scf05960g00004.1 426 LAACSGDATIHLLDFGAQ 443
                               ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.508.5E-561115No hitNo description
SuperFamilySSF813835.01E-761151IPR001810F-box domain
SuperFamilySSF509785.49E-11116217IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.2E-9145208IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.49E-11283439IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.2E-9394439IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSSSSSPPSS LGGLGGGEEP SSSRSRRRAG HDVWPEPFVE DFALLVATDA SRSIGRLAAA  60
QALSVCSTWQ AVSHSDLLWQ NLTRRIWNRH YLLRQSWREE YIYWHQTANN FLHHRYTYNT  120
LHFVAENNDN DDNNNNNVDS LFCRRLALSD NHLAVGFSDG SVQLFYLPTR LHLSTFHPRH  180
RDRLGRFSRA VSGIVLSYVQ LVFASLDGDI HVAVIGDAAP PRRAHLGDVV NDGALVDFTG  240
CDQWWVGLYA GVPGRAFHIW NKETEELLFV GGELTDPESL MGWHLLTEVT ELVGRIRATT  300
QDTAVACTSL QIMVIDLQNQ GIIIRGQPFR RGLIVASFDA RNETLVAVDS RGVASVRRAD  360
DLEEICRFNV RGANQRGIVG CMNGGYALMW IGNVIRVWEI QHGVYLYSIR ERIGDINAII  420
ADERYLAACS GDATIHLLDF GAQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244733.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-160SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1J6J4Z50.0A0A1J6J4Z5_NICAT; Transcriptional regulator sterile apetala
STRINGXP_009596786.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-156SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]