PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf05937g02016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 683aa MW: 75964.3 Da PI: 6.4158

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05937g02016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.5	1.3e-20	586	663	23	100
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 a++ +++a v kl+ ++++++ll++lpe++r da+ss+vyeA+ar+rdPvyG+vg i+ lq+q++ l+ ++ +++e Niben101Scf05937g02016.1 586 RADELERLAKVFKLYNREELQELLQKLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISYLQNQVSLLEMRVEIAQAE 663 56788999************************************************************9999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.68E-6	102	181	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	4.3E-5	106	181	IPR029016	GAF domain-like
PROSITE profile	PS50891	11.723	535	664	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-19	586	661	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MAGGNEAFRI CSSVSEALSY MPFSLQYTEP NTKNDLWVFW SQHNSEFPTV FSSTAYTTIY 60 HDTIKEKITS ALKNAYISDN FGCWSECLKF RIPIVTDCSD NEYRLGPIGR VFKHGLPEMS 120 PDVSRYSAND YPQHGLVSAA GLGNYLAVPV FEPLNNQSIG VLEIIGDKKG SFSEDLVQMV 180 YEMLNKVDLR SSNMYGHPDE KDFKGLARAL KEIEEQLSFI CRTHQLPLAQ TWLPILDGSS 240 LKRFMTTKEQ FCICTSAGYE FRAACDMFHL GKSQGVVSKA FLTCSSCFCS DITQLSMTEY 300 PLAHVAHRVG LHSSFAICLQ SSYTGDYVYL LEFFFPQDNK SDCRSPQTIL NMLLASMKRQ 360 FRSFKLASGQ KLGEKLSVEI IPVPADDGLN SFEICHSVKP LSDIEAVARP GKIEWFDPLN 420 RLSKSGSTVN ICPKNIDLTT SSRTANTTTK VTNMRVLTSR VLSNSSKGEG MMTVSEGHHR 480 INSVVLQQSV GAKVNGTETT LASQSAPNSL GTKHLEINDM NCSSDQLESA KVADRHCEEC 540 SGGDQSCHET TTSLTHAAKP TTQAAGVQNE SIIPRKYPNF LLSGVRADEL ERLAKVFKLY 600 NREELQELLQ KLPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISYLQNQV SLLEMRVEIA 660 QAEALCMQMD MADPKKLREP LWS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MAGGNEAFRI CSSVSEALSY MPFSLQYTEP NTKNDLWVFW SQHNSEFPTV FSSTAYTTIY  60
HDTIKEKITS ALKNAYISDN FGCWSECLKF RIPIVTDCSD NEYRLGPIGR VFKHGLPEMS  120
PDVSRYSAND YPQHGLVSAA GLGNYLAVPV FEPLNNQSIG VLEIIGDKKG SFSEDLVQMV  180
YEMLNKVDLR SSNMYGHPDE KDFKGLARAL KEIEEQLSFI CRTHQLPLAQ TWLPILDGSS  240
LKRFMTTKEQ FCICTSAGYE FRAACDMFHL GKSQGVVSKA FLTCSSCFCS DITQLSMTEY  300
PLAHVAHRVG LHSSFAICLQ SSYTGDYVYL LEFFFPQDNK SDCRSPQTIL NMLLASMKRQ  360
FRSFKLASGQ KLGEKLSVEI IPVPADDGLN SFEICHSVKP LSDIEAVARP GKIEWFDPLN  420
RLSKSGSTVN ICPKNIDLTT SSRTANTTTK VTNMRVLTSR VLSNSSKGEG MMTVSEGHHR  480
INSVVLQQSV GAKVNGTETT LASQSAPNSL GTKHLEINDM NCSSDQLESA KVADRHCEEC  540
SGGDQSCHET TTSLTHAAKP TTQAAGVQNE SIIPRKYPNF LLSGVRADEL ERLAKVFKLY  600
NREELQELLQ KLPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISYLQNQV SLLEMRVEIA  660
QAEALCMQMD MADPKKLREP LWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-19	588	665	35	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-19	588	665	35	112	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767935.1	0.0	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_009767936.1	0.0	PREDICTED: protein NLP7-like isoform X2
Refseq	XP_009767937.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767938.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767939.1	0.0	PREDICTED: protein NLP7-like isoform X3
Refseq	XP_009767940.1	0.0	PREDICTED: protein NLP7-like isoform X3
TrEMBL	A0A1U7VIP6	0.0	A0A1U7VIP6_NICSY; protein NLP7-like isoform X3
TrEMBL	A0A1U7W104	0.0	A0A1U7W104_NICSY; protein NLP7-like isoform X1
STRING	XP_009767935.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13675	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-52	NIN like protein 7