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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05911g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 196aa MW: 22481.2 Da PI: 6.8738 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94 | 1.2e-29 | 27 | 79 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH+ F+eave+ GGs+kAtPk+i ++m vkgL ++hvkSHLQ+YR Niben101Scf05911g00004.1 27 PRLRWTPELHQLFIEAVEHHGGSDKATPKRIQQMMAVKGLKISHVKSHLQMYR 79 8**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.396 | 23 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 24 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.04E-16 | 27 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-23 | 27 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-10 | 28 | 79 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MMEFSIMKNS SSQKISRVRQ YKKSSVPRLR WTPELHQLFI EAVEHHGGSD KATPKRIQQM 60 MAVKGLKISH VKSHLQMYRN LKERASINIA RSSFPQQIKP GSQLSYKAGV SDYGDQIAEN 120 MYCFDYQEAQ GSLSSGMTKE EEEGEISEFP QANGECEREI NFWPNLDDYQ HSQSDNSIKD 180 NSHINLDLSI SSCFYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785228.1 | 1e-121 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A1U7X317 | 1e-120 | A0A1U7X317_NICSY; transcription repressor KAN1-like | ||||
STRING | XP_009785228.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9459 | 13 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-26 | G2-like family protein |