PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05901g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 414aa MW: 46640.8 Da PI: 9.807

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05901g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Niben101Scf05901g07001.1 50 FICEVCNKGFQREQNLQLHRRGH 72 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.99E-6	49	72	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-6	49	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	1.9E-5	50	72	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	50	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	63	93	123	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.99E-6	123	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MKSKISSKLL TVYQEQDLPN KKRRKLPGNP DPRAEVIALS PKILMETNRF ICEVCNKGFQ 60 REQNLQLHRR GHNLPWKLKQ KTSSDEIRKR RVYICPEPTC IHHNPARALR DLTGIKKHYS 120 RKHGEKKWKC DKCSKKYALQ SDWKKVHSKT CGTKEYKCDC GTIFSRAFCD ALTEENNKVN 180 QSLTSTTGPS HTQVSELMSA SILNLSEIRN QNMKIPLKPS PQILNIQTPT EPLLNMAGSM 240 FTSPINLTSS SFSGFQLSTN SSNMSSSATA LLQQAAQMGA TVSSSMNSPL VVQKEYPSLF 300 QSDHNHQTQI GSSVHGFFGS MLQNGTQETL ISELLNSNSS AGDHQKTSTM QNQGWYNGLI 360 NETKINGESG NDSLKLDFLG IGGMRQRNSH EMHQQQHQEM SFEQQKEMSS MRND

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MKSKISSKLL TVYQEQDLPN KKRRKLPGNP DPRAEVIALS PKILMETNRF ICEVCNKGFQ  60
REQNLQLHRR GHNLPWKLKQ KTSSDEIRKR RVYICPEPTC IHHNPARALR DLTGIKKHYS  120
RKHGEKKWKC DKCSKKYALQ SDWKKVHSKT CGTKEYKCDC GTIFSRAFCD ALTEENNKVN  180
QSLTSTTGPS HTQVSELMSA SILNLSEIRN QNMKIPLKPS PQILNIQTPT EPLLNMAGSM  240
FTSPINLTSS SFSGFQLSTN SSNMSSSATA LLQQAAQMGA TVSSSMNSPL VVQKEYPSLF  300
QSDHNHQTQI GSSVHGFFGS MLQNGTQETL ISELLNSNSS AGDHQKTSTM QNQGWYNGLI  360
NETKINGESG NDSLKLDFLG IGGMRQRNSH EMHQQQHQEM SFEQQKEMSS MRND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-24	124	180	3	66	Zinc finger protein JACKDAW
5b3h_F	9e-24	124	180	3	66	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	24	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628988.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_016515957.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q8GYC1	2e-93	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A1S4DRB6	0.0	A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRING	XP_009628988.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	3e-81	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]