PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf05858g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 265aa MW: 29625 Da PI: 9.8865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05858g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.6	1.1e-11	56	100	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW+++E+ ++ + ++lG g+W+ Ia+++ Rt q+ s+ qky Niben101Scf05858g00007.1 56 RWSEDEHRAFLIGLEKLGRGNWAGIAKEFVPSRTHTQVASHAQKY 100 9***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.036	49	105	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.3E-15	52	103	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.59E-15	52	105	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-8	53	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-11	53	100	IPR009057	Homeodomain-like
CDD	cd00167	4.58E-8	56	101	No hit	No description
Pfam	PF00249	2.0E-9	56	100	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAKEIHSERR VEISRTKKVG SNSNSIKLFG VVITTNSGSS SSRSNMGRRN SNKGTRWSED 60 EHRAFLIGLE KLGRGNWAGI AKEFVPSRTH TQVASHAQKY FERLEAEKDN KRAVIERQKS 120 SVFDINLAEE SCRSSSPTNQ PVSEEASWSK RVVVPVTKDK EPLNQETPIS PMPISYRVPG 180 FPPVPMAYNK NLTISSNDQG PHVYAASWVP NIQFYGNYAY FPMSYYQFAN ISAHNFASSS 240 TNATPDQRVS SQSDRASVDN LDLTI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016442573.1	0.0	PREDICTED: myb-like protein J
TrEMBL	A0A1S3XRK0	0.0	A0A1S3XRK0_TOBAC; myb-like protein J
STRING	XP_009802911.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13677	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-25	MYB_related family protein