PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05848g05011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 481aa    MW: 54204.5 Da    PI: 8.0954
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05848g05011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-3177134260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDg++WrKYGqK+vkgs+fprsYY+Ct+++Cpv+kkve++  +++++ei+Y+g Hnh+k
  Niben101Scf05848g05011.1  77 DDGFTWRKYGQKHVKGSNFPRSYYKCTQQSCPVRKKVECAP-NGQIIEIVYNGAHNHPK 134
                               8****************************************.***************85 PP
2WRKY44.53.1e-14285329259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK+vkg+++pr             k+ver++++ k v++tYeg+Hnhe
  Niben101Scf05848g05011.1 285 EDGYRWRKYGQKVVKGNPNPR-------------KHVERASDNLKSVITTYEGKHNHE 329
                               8*******************8.............9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2766134IPR003657WRKY domain
SuperFamilySSF1182902.62E-2474134IPR003657WRKY domain
SMARTSM007748.6E-3476134IPR003657WRKY domain
PROSITE profilePS5081121.48277135IPR003657WRKY domain
PfamPF031069.2E-2577133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-18269331IPR003657WRKY domain
SuperFamilySSF1182905.1E-16277331IPR003657WRKY domain
PROSITE profilePS5081123.261279331IPR003657WRKY domain
SMARTSM007741.2E-19284330IPR003657WRKY domain
PfamPF031061.7E-8285329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSLTCRPAV LTIPAGISPA ALLDSPIPTE TNVQQTLNSI EFTNKQIPQQ DEFTKKENQF  60
EQKGTVFSSS ISPSSSDDGF TWRKYGQKHV KGSNFPRSYY KCTQQSCPVR KKVECAPNGQ  120
IIEIVYNGAH NHPKTQYIRR PIMDNSYVVR EVEEIGQENS SVWRNQQFEC NKNVTNYNTN  180
SLKRTSSASV LTEVSDPMSS NPKSMNMFES AETPEFSSTL TSYDGNDGDW VTQEGTFPGD  240
DVNECELEPK RRKKESYSAE PSLLSRTVRE PKVVLQVETE IDILEDGYRW RKYGQKVVKG  300
NPNPRKHVER ASDNLKSVIT TYEGKHNHEV PSTNKTNVVP RHIRPASTLN GQSNCMTSRK  360
SLKSSNCREQ VQDLPFPFER KPFVGSECLR PSFVGSYLGD LSFGACSLQL PNFPLPLPLP  420
SRRSFPARLN EPPLGDFRLN NHHLLQNGAS NSFLAVGNMQ HINDDNNNSS LLKAKEEIQW  480
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2064332178Probable WRKY transcription factor 4
2lex_A3e-2064332178Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254PKRRKKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615390.10.0PREDICTED: probable WRKY transcription factor 4 isoform X2
RefseqXP_018630334.10.0PREDICTED: probable WRKY transcription factor 4 isoform X2
TrEMBLA0A1U7XGN30.0A0A1U7XGN3_NICSY; probable WRKY transcription factor 4 isoform X2
STRINGXP_009615387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.14e-60WRKY DNA-binding protein 4