PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05787g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 493aa    MW: 56674.9 Da    PI: 5.0322
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05787g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34201102101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d+ ++ ++sw++ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F
  Niben101Scf05787g01001.1  20 FLSKTYELVDDPYTNPVVSWNHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEF 95 
                               9***************************************************************9998.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                                +g+++ll++i r+k
  Niben101Scf05787g01001.1  96 LRGQRHLLKNIYRRK 110
                               *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.4E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-6016109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-202043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-205870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MVGIMMENRN GGSNSAPAPF LSKTYELVDD PYTNPVVSWN HNGRSFVVWN PPEFARDLLP  60
KYFKHNNFSS FIRQLNTYGF RKVDPEQWEF ANEEFLRGQR HLLKNIYRRK PIHSHSTTGS  120
QSVAPLTDSE RQEYEEEIER LKRENSLLQS SAKKHEKFNQ EYEFGVKFME QRLQNIVHRQ  180
GKLISLLAQL LQRPEFSSDV IQYTNNNSKK RRLLVSNCLI EEENATNSIV VPKLDLEIVK  240
KLDSSINFWE RFLYGIRNTP TKDQMHDFEH AQVLPSPIVI REMDASSDDS GKRNSPIDHS  300
SPPSRDIQSS PELEGPLSQV ISSIYINLEC QHKPSDQSNA SIDATKNQVE GNTDMSKSVS  360
NSGNDVFWQQ FLTETPGLSE PQEVEHVSKD TNCLTCDTML AEENQRYWWS HGFNVENLAE  420
LSNSGNDVFW QQFLTETPGL SEPQEVEHVS KDTNCLTCDT MLAEENQRYW WSHGFNVENL  480
AERMGLLSPA TGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-241110912120Heat shock factor protein 1
5d5u_B4e-241210922129Heat shock factor protein 1
5d5v_B4e-241210922129Heat shock factor protein 1
5d5v_D4e-241210922129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228988.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A314KMG70.0A0A314KMG7_NICAT; Heat stress transcription factor a-4b
STRINGXP_009769104.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.15e-66HSF family protein