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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05767g03024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 416aa MW: 45469.8 Da PI: 4.8436 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 99 | 143 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W++I+r+ Rt+ q+ s+ qk+ Niben101Scf05767g03024.1 99 AWTAEEHRLFLQGLEKYGRGDWRSISRHYVVSRTPTQVASHAQKF 143 7******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.704 | 4 | 57 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.036 | 8 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.69E-4 | 11 | 57 | No hit | No description |
SuperFamily | SSF46689 | 1.17E-8 | 11 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.989 | 92 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-16 | 94 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 96 | 146 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.8E-17 | 96 | 146 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.7E-11 | 97 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.64E-11 | 99 | 144 | No hit | No description |
Pfam | PF00249 | 8.7E-12 | 99 | 142 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MNPDQTCNSS SWTKEEDRAF ETALAIYAGD SDQLMKIAAA VPQKSIPEIL QHYKKLVDDI 60 NDIEAGKVPL PRYGRMQGCS SRRSRLLSGA EVERRKGVAW TAEEHRLFLQ GLEKYGRGDW 120 RSISRHYVVS RTPTQVASHA QKFFSRLKDD NRVRRRRSIH DITTVDAGTT EPSQGQETEK 180 LNGPCGGQLQ WPITDYVTEA FDIGMFPLLG PVTNCMTDAI GGSYGVNPET LPFGTSVFSE 240 LNSSLPNVDD EFFLGVEDLI TVPTQGTSEA WRGVDTRTSP SLSWQPSFAR GTGMYTHPVN 300 GVGYEMEELI TKELVEATQV GPIVDTARLP LSIVDHIGVH GCTTSSSGAK NGFESTVGAR 360 EAGLSVDSNP LLSIPGTSGG GVYPCSNPSI KDDNIFDLED LFLDHMIGFD GKEGRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265247.1 | 0.0 | PREDICTED: uncharacterized protein LOC109242839 isoform X2 | ||||
TrEMBL | A0A314L2F7 | 0.0 | A0A314L2F7_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009631817.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13950 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-49 | MYB family protein |