PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05767g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 415aa    MW: 45360.6 Da    PI: 5.3114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05767g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-1498142347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ l++++ +++G g+W++I+r+    Rt+ q+ s+ qk+
  Niben101Scf05767g03007.1  98 AWTAEEHRLFLQGLEKYGRGDWRSISRHYVVSRTPTQVASHAQKF 142
                               7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.704457IPR017877Myb-like domain
SMARTSM007170.036859IPR001005SANT/Myb domain
CDDcd001676.67E-41157No hitNo description
SuperFamilySSF466891.17E-81164IPR009057Homeodomain-like
PROSITE profilePS5129420.26291147IPR017930Myb domain
SuperFamilySSF466891.66E-1693148IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-1795145IPR006447Myb domain, plants
SMARTSM007175.7E-1395145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-1196138IPR009057Homeodomain-like
PfamPF002498.7E-1298141IPR001005SANT/Myb domain
CDDcd001674.61E-1198143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MNPDQTCNSS SWTKEEDRAF ETALAIYAGD SDQLMKIAAA VPQKSIPEIL QHYKKLVDDI  60
NDIEAGKVPV PRYRRMQGCS SRRSRLSGAE VERRKGVAWT AEEHRLFLQG LEKYGRGDWR  120
SISRHYVVSR TPTQVASHAQ KFFNRLKDNN KVRRRRSIHD ITTVDAGTTE PSQGQEIEKL  180
NGPCGGQLQW PVTHYVTEAF DIGMFPLLGP VTNCMIDAIG GSSGVNPETL PFGTSVFSEL  240
NSSLPNVDDG FFLGVEDLIT VPKQGTSEAW RGVDTRTSPS LSWQPSFAGG TGMYTHPVNS  300
AGYEMEELIT KELVETTQDC SIVDTARLPL SIADHIGVHG CTTSSSGAKN GFESTVGARE  360
ASLSDDSNPL LSIPGTSGGG VYPSFNASIK DDNIFNLEDL FLDRMIGFNG KEGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265247.10.0PREDICTED: uncharacterized protein LOC109242839 isoform X2
TrEMBLA0A314L2F70.0A0A314L2F7_NICAT; Transcription factor myb1r1
STRINGXP_009631817.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.15e-53MYB family protein