PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf05710g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 194aa MW: 22167.8 Da PI: 7.2724

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05710g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.1e-09	24	47	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ Niben101Scf05710g02007.1 24 RWSLIAGRLP-GRTDNEIKNYWNTH 47 4*******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.36E-12	3	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.85	9	52	IPR017930	Myb domain
SMART	SM00717	2.6E-5	13	50	IPR001005	SANT/Myb domain
CDD	cd00167	1.63E-9	16	48	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-12	21	65	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-6	23	47	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERWSLIAG RLPGRTDNEI KNYWNTHIRR KLLSRGIDPT 60 THRPINEPNT TPKVTTISFT VPNIKDEEDQ KMINVKGELS GLSQEDEIST NSSQFQELQC 120 PDLNLELRIS PPYQQNYQND QDLKQSPRCF ACSLGIQNSK DCNCSKNNMV NIASYDFLGL 180 KTKGVLDYRT LETK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260747.1	1e-124	PREDICTED: myb-related protein 308-like
Swissprot	P81393	3e-51	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A314LEE7	1e-123	A0A314LEE7_NICAT; Transcription repressor myb4
STRING	XP_009804432.1	1e-121	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-47	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]