PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05678g02016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 36661.4 Da PI: 10.1554 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125 | 8e-39 | 91 | 212 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++kkdrhski T++g RdRRvRls+ +a++fFdLqd+L fdk+skt++WL++++k ai elt + ++a + ++ ++ Niben101Scf05678g02016.1 91 PVKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLRFDKPSKTLDWLFTKSKLAIEELTTGQMKTA-SL--------NEPKK 166 68**************************************************************77777.12........11122 PP TCP 87 sg....kaaksaakskksqksaasalnlakesrakarararertrek 129 ++ +++++ ++++++++ +l +esrakarararert k Niben101Scf05678g02016.1 167 IPscinSECEDVVIA-RAKQEEEAIVHLVRESRAKARARARERTIRK 212 223332555555544.4444444479*****************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-34 | 92 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.629 | 93 | 151 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.544 | 195 | 212 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MFPSGNSNGN PILQCSIPSF HSSNSSFHGL NGNQILLHQH QDQVSTHYLA ANNGYLIDNS 60 SSAMMFANNV IHNRSNNQEI GCPLNKMMKK PVKKDRHSKI LTSQGHRDRR VRLSIGVARK 120 FFDLQDMLRF DKPSKTLDWL FTKSKLAIEE LTTGQMKTAS LNEPKKIPSC INSECEDVVI 180 ARAKQEEEAI VHLVRESRAK ARARARERTI RKVWSQIEAK INSSSVVVKE QTKIDEIKEM 240 IHGSVLADSK NIKSSSSTLG FHHLNLSGTE EARANSNYNS SSSSTRNWDH DVNRTITNSS 300 LSAVMATIST SSQESMGLIS LQANLKVGE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235310.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A1J6KTR9 | 0.0 | A0A1J6KTR9_NICAT; Transcription factor tcp1 | ||||
STRING | XP_009793865.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 6e-29 | TCP family protein |