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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05633g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 823aa MW: 90681.4 Da PI: 6.2402 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 118 | 193 | 1 | 71 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ltpsd+++ g +++p+ +a+++ +++ + l ++d +g +We+++iyr++++r++lt+GW++Fv+ Niben101Scf05633g00012.1 118 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvAEPPVQ--NLYIRDIHGCVWEFRHIYRGTPRRHLLTTGWSKFVNK 193 89*********************999*****98666666..6**********************************86 PP | |||||||
2 | B3 | 74.3 | 1.4e-23 | 326 | 428 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+ltpsd+++ g +++p+ +a+++ +++ + l ++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD Niben101Scf05633g00012.1 326 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvAEPPVQ--NLYIRDIHGCVWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGD 408 89*********************999*****98666666..6******************************************* PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 + vF ++ +++el+v+v+r+ Niben101Scf05633g00012.1 409 SAVFARKT-NTGELYVGVRRA 428 *****544.9999******97 PP | |||||||
3 | Auxin_resp | 83.2 | 5.8e-28 | 472 | 555 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+ +++Fev +Pra++++Fvv++e ve++ +v ++vGmR+kma+etedss++ + +Gtv++v+ ++ W++S+Wr+L+ Niben101Scf05633g00012.1 472 AVEMAARGMAFEVSCYPRAGWADFVVRAEAVEASSTVFWTVGMRVKMAVETEDSSRTACfQGTVSSVNLPQSGPWRGSPWRMLQ 555 6788999***************************************************99**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-22 | 105 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-24 | 109 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-14 | 117 | 194 | No hit | No description |
Pfam | PF02362 | 1.8E-13 | 118 | 193 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.823 | 118 | 192 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-4 | 118 | 207 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.44E-28 | 313 | 433 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-32 | 317 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.83E-21 | 325 | 427 | No hit | No description |
Pfam | PF02362 | 1.7E-21 | 326 | 428 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 326 | 429 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-19 | 326 | 429 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-25 | 472 | 555 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 823 aa Download sequence Send to blast |
MPPSTTAAPP VSNDVDPTVW KAIAGNSVQI PTVGTRVYYF PQGHAEHANC GSPIFISSPI 60 PPFILCRVLS VRFLADSVTD EAYAKIFLLP INQSEDNNNV AMNMNGDVED AENEVVSFVK 120 ILTPSDANNG GGFSVPRFCA DSIFPRLNFV AEPPVQNLYI RDIHGCVWEF RHIYRGTPRR 180 HLLTTGWSKF VNKYTHAHHI FSALRRSPMP PSTTAAPPVS NDVDPTVWKA IAGNSVQIPT 240 VGTRVYYFPQ GHAEHANCGS PIFISSPIPP FILCRVLSVR FLADSVTDEA YAKIFLLPIN 300 QSEDNNNVAM NMNGDVEDAE NEVVSFVKIL TPSDANNGGG FSVPRFCADS IFPRLNFVAE 360 PPVQNLYIRD IHGCVWEFRH IYRGTPRRHL LTTGWSKFVN SKKLVAGDSA VFARKTNTGE 420 LYVGVRRATR GNDICEGWNS TVLRSTEQTS TGGEVRWRTG QGRVATEAMV EAVEMAARGM 480 AFEVSCYPRA GWADFVVRAE AVEASSTVFW TVGMRVKMAV ETEDSSRTAC FQGTVSSVNL 540 PQSGPWRGSP WRMLQITWDE PEVLQYAKRV NPWQVECILP TSQLHSGFPP SKKIKLPNGL 600 LPDGDEEFFF PMTGLSNPLI GLCSPSLGNY TSFPAGMQGA RQNQICVSSL SNVKSNNNLG 660 LGTDNSLDEE FKPKLESVST KLNIGSSYSD NFSPDSQSSV HFWDNELVTK PGSSSLTKVC 720 VNSFQLFGKV IHVEPVEGGF DGFGCSENDS IEAFKQIDGA VKSNISLSKP YIELFDSLDV 780 QHQRASAVEA CIQGRSGFQQ WFHCGFFLSS EIQRLQSNML DVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-65 | 19 | 583 | 23 | 360 | Auxin response factor 1 |
4ldy_B | 1e-65 | 19 | 583 | 23 | 360 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233424.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-169 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A1J6KFA8 | 0.0 | A0A1J6KFA8_NICAT; Auxin response factor | ||||
STRING | XP_009791106.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-160 | auxin response factor 17 |