PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 217aa MW: 25158.4 Da PI: 9.2983

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05618g05002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ Niben101Scf05618g05002.1 73 RGHITPQEEGIIIELHGLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 117 6778****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	12	67	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.24E-23	15	114	IPR009057	Homeodomain-like
SMART	SM00717	0.013	16	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-14	18	74	IPR009057	Homeodomain-like
CDD	cd00167	0.00152	19	67	No hit	No description
PROSITE profile	PS51294	24.592	68	122	IPR017930	Myb domain
SMART	SM00717	1.4E-13	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-13	73	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-23	75	121	IPR009057	Homeodomain-like
CDD	cd00167	3.30E-9	77	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVGMTSWGAN SDQQWRKGPW TPEEDKLLSE YDLVLSFSNI YIENLGVGEA GLNRTGKSCR 60 LRWVNYLRPG LKRGHITPQE EGIIIELHGL WGNKWSTIAR YLPGRTDNEI KNYWRTHFKK 120 KQKASVRQDK RKTQRQRNQQ QQHCITANKL SPKAEEAIMQ KSNEKIDNEY QDAVTFINYH 180 QSMDPVMDLP PVTTSSDISH AWTDTIPMDG LWGGLWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-20	17	121	7	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:16531467}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234159.1	1e-113	PREDICTED: myb-related protein 340-like
Swissprot	Q4JL84	1e-41	MYB59_ARATH; Transcription factor MYB59
TrEMBL	A0A1J6KBZ4	1e-111	A0A1J6KBZ4_NICAT; Transcription factor myb59
STRING	XP_009802593.1	1e-110	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	5e-57	myb domain protein 121

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]