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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf05541g02010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
C3H |
Protein Properties |
Length: 416aa MW: 46736.4 Da PI: 8.7872 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf05541g02010.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.8 | 3.3e-12 | 279 | 304 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Niben101Scf05541g02010.1 279 YQPDICKDYKETGYCGYGDSCKFMHD 304
66789********************7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 2.75E-9 | 277 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-10 | 279 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-12 | 279 | 309 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 9.8E-14 | 339 | 397 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 4.89E-13 | 355 | 398 | No hit | No description |
Pfam | PF13920 | 6.8E-9 | 355 | 396 | No hit | No description |
SMART | SM00184 | 9.8E-5 | 356 | 393 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.498 | 356 | 394 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 1.95E-8 | 356 | 397 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 371 | 380 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 416 aa
Download sequence Send
to blast |
IGFTTVNEGG WLRPLSRRSY IWTLNKRNAP CFRSPSASSP PPIHFRASRH RRSAARRTSI 60 LRPLTAIPSA ISVTMENPNT PAFQSNPAEA ETEQPPTAPP SSSSVCNFFN KPSKAKNIRK 120 RPTVEEGENE DALGESSVIY TKKKPAIADN KLRFSTGGSK CNKATESNVH SKAPIFHFES 180 SKEIQVQTDS RATATLETET EFSKDARAIR ERALKQAEEA LKGKSKTGGD EKLYKGMNQY 240 TDYKAGLRRE HTISSEKAGG AHGPLRASAH IRVSARFDYQ PDICKDYKET GYCGYGDSCK 300 FMHDRGDYKS GWQIEREWDE AEKERKQKLS MGMLDEDDED AEKSDEDDDD ALPFACFICR 360 DPFVDPVVTK CKHYFCEHCA LKHHAKNKKC FVCNQPTLGI FNTAFEIRKR MAAQGK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5z56_M | 5e-67 | 105 | 411 | 14 | 317 | RING finger protein 113A |
5z58_M | 5e-67 | 105 | 411 | 14 | 317 | RING finger protein 113A |
6ff4_t | 5e-67 | 105 | 411 | 14 | 317 | RING finger protein 113A |
6ff7_t | 5e-67 | 105 | 411 | 14 | 317 | RING finger protein 113A |
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