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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05506g09008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 27380.7 Da PI: 10.2427 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.4e-38 | 96 | 155 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCds+ntkfCy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Niben101Scf05506g09008.1 96 EAGLKCPRCDSSNTKFCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSK 155 6779*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-35 | 79 | 148 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-32 | 98 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.478 | 99 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 101 | 137 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSFSSFPVYL DHPNLQQLQQ LDHHQGNPGL ENSQLPTVAP HAQLQQLDHH QQGNPGLENS 60 QLPTGGPPAQ VGGSPGSIRP GSMVDRARLA KIPLPEAGLK CPRCDSSNTK FCYFNNYNLA 120 QPRHFCKSCR RYWTRGGALR SVPVGGGCRR NKRSKSTNNS SKTAGSSNSA ERQIGTTSTS 180 TSASPSSCSK EITGQHFSQS STHLTPLMAA FQNLNHQYGG FQPPPLVSLQ LVQVLQAAAK 240 KLLANTFHSH PHI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444808.1 | 1e-128 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Swissprot | Q9M2U1 | 2e-45 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A1S3XXZ7 | 1e-126 | A0A1S3XXZ7_TOBAC; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009774236.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-42 | Dof family protein |