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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05483g01006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 14810.2 Da PI: 4.5985 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.4 | 2.2e-12 | 50 | 106 | 37 | 96 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ + g++W++ ++ +++ r l++GWk Fv++n+Lk gD +vF+l++ s++++++kv Niben101Scf05483g01006.1 50 VVLTCCGKKWDMFCSGDNQ--R-RLKQGWKFFVNDNNLKIGDGLVFELVEGSRAKMTFKV 106 3455679*******44444..4.59**********************9977777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-15 | 15 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-14 | 15 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-15 | 16 | 110 | No hit | No description |
PROSITE profile | PS50863 | 11.505 | 18 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0037 | 18 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-11 | 32 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAGSKDEDIS PLCGKPYFDF ILGQSNLEPK YMMFLPAKIC PELIPGEVPV VLTCCGKKWD 60 MFCSGDNQRR LKQGWKFFVN DNNLKIGDGL VFELVEGSRA KMTFKVQILR GDFPAELMTE 120 PEDGTAENPI VL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792605.1 | 2e-87 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1U7Y1E4 | 4e-86 | A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009792605.1 | 7e-87 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-08 | B3 family protein |