PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05444g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 77163.8 Da    PI: 7.2428
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05444g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24123224199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD
  Niben101Scf05444g04004.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGD 205
                               89****************************986445444..8999**************************************** PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Niben101Scf05444g04004.1 206 SIVFL--RAENGDLCVGIRRA 224
                               *****..4488999****997 PP
2Auxin_resp113.91.5e-37291374183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+ +++FevvY+Prast+eFvvk++ v++a++v++s GmRfkm fetedss++++ +Gt+++v+  dp++WpnS+Wr+L+
  Niben101Scf05444g04004.1 291 AAKLAACGQPFEVVYYPRASTPEFVVKASAVRAAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVEDPIHWPNSPWRLLQ 374
                               6889999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-38114227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-30116227IPR015300DNA-binding pseudobarrel domain
CDDcd100179.36E-22122223No hitNo description
PfamPF023624.5E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239123225IPR003340B3 DNA binding domain
SMARTSM010199.0E-23123225IPR003340B3 DNA binding domain
PfamPF065071.7E-32291374IPR010525Auxin response factor
PROSITE profilePS5174517.661610690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MINIMNPVNK PMNEVEKGLD PQLWHACAGG MVQMPPLNSK AFYFPQGHAE HAHKNVDFGG  60
FPKIPPLILC RVSSIRYLAD TETDEVYAKI RLVPLKGNEW DVEDDAGFLG LDKNENQEKP  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGS GPEVPSGWNT  240
GPGNYASSLY HGFPGFLSED EKKFIRNGQA AKSDDGIRGK GKVLAESVIE AAKLAACGQP  300
FEVVYYPRAS TPEFVVKASA VRAAMRVQWS SGMRFKMPFE TEDSSRISWF MGTISSVHVE  360
DPIHWPNSPW RLLQVHWDEP DLLQNVKRVS PWLVELVSNM PPIHLSPFSP PRKKLRLPQP  420
PEFPMVGQLS MSSLLNNPLS PSSPLCCISD NIPAGIQGAR HAQCGLSSSD LHFNKLQSGL  480
LPFGFKELER SVPPSRLLKG GSFMTSFDND ENISCLLTMG NTSPTSMKRK ETQTPTFMLF  540
GKPILTEQQM SLSCSSETVG NSSSNGNPEK MMNLSEGSGS AVIHNGPPEN SSGEVLPWYK  600
DQKLEFRMET GHCKVFMESE DVGRTLDLSV LGSYEELYKK LADMFGVGRS EMLSNVLYQD  660
LTGTVKHTGD EPFSQFVQTA RRLTILTDSG SDNIRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761939551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784518.10.0PREDICTED: auxin response factor 16-like
RefseqXP_009784519.10.0PREDICTED: auxin response factor 16-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7X1180.0A0A1U7X118_NICSY; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]