PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05430g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 296aa    MW: 32799.2 Da    PI: 9.6794
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05430g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.51.7e-14215260449
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                                +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN+ L ke 
  Niben101Scf05430g00004.1 215 MQRQRRMIKNRESAARSRERKQAYQVELESMAIKLEGENELLLKEK 260
                               79*************************************9988774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.4E-10212277IPR004827Basic-leucine zipper domain
PfamPF001706.1E-13214261IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.036214259IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-9216266No hitNo description
CDDcd147075.29E-14216261No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-12217265No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASMKLMTSS ASRNSDRRKS SASSSSSSST MPQDLQFSNN GSNNSSSNLE ATSVTPDVIF  60
RNVYGDSHNN ALLNAEIALL DAAGAITPIS DSETPTATAV TASEVPPARR TVDDVWREIV  120
EGKREKQRAA VVAGCKEEMM TLEDFLVKAG AVEEEDTAPV QRPEVKVELG TERLSGGIFA  180
FDNSTPHMPT PQQSVPGFGR GKRKAVLEPL DKVAMQRQRR MIKNRESAAR SRERKQAYQV  240
ELESMAIKLE GENELLLKEK EVRTRAHYKQ LIEKVIPVVD KRKPPRVLRR VCSMQW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803830.10.0PREDICTED: G-box-binding factor 4-like
RefseqXP_016491915.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427771e-42GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1S4BSQ00.0A0A1S4BSQ0_TOBAC; G-box-binding factor 4-like
TrEMBLA0A1U7YYN10.0A0A1U7YYN1_NICSY; G-box-binding factor 4-like
STRINGXP_009803830.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-40bZIP family protein