PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf05404g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 216aa MW: 24387.3 Da PI: 5.3182

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05404g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Niben101Scf05404g01002.1 53 YRCSFCKRGFSNAQALGGHMNIH 75 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.45E-6	51	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	51	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0053	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.468	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTSSPFCSKY LFIPTSQPCP FNSMEIDPPN SDKSDKIITW SSDELGLGHV KFYRCSFCKR 60 GFSNAQALGG HMNIHRKDRA RLREFSSENL LSLDINNSVN PPLPPPLPAH AEEDSLQHEV 120 SCDETISSPS KRPRVNTSEE NDHKVNYDDH NHETIIGDVL QLPLFTMTPL IKEASNCVDR 180 QGEEKGTQLN HVSEWDLELR LGMEPPESSM KIPRSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229488.1	1e-113	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A314KKV0	1e-112	A0A314KKV0_NICAT; Transcriptional regulator tac1
STRING	XP_009768409.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	5e-15	C2H2 family protein