PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf05368g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 766aa MW: 87201.1 Da PI: 5.8517

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05368g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.6	6.3e-115	393	764	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL++cA+av+++d + a +lL++++ ++sp gd++qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ Niben101Scf05368g02002.1 393 LRTLLINCAQAVAADDCRSAIELLKQIRLHSSPFGDSNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYL 474 6789**********************************************************999999...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 sP+ k+s ++ N++I+ + ++ rvH+iDf+i +G+QWp+L+q +++R++gpp+lRiTg++ p++g +e++eetg+rLa++ Niben101Scf05368g02002.1 475 ASSPFRKLSGFASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRISAREGGPPKLRITGIEFPQPGfrPAERVEETGRRLADY 559 ***************************************************************9************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A++++vpfe+++ +ak++e+++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F Niben101Scf05368g02002.1 560 AQTFNVPFEYHA-IAKKWETIRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFF 643 ********.7******************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++rf e l ++salfd+lea++pres er+ +Ere++gre+ nv+aceg er+er et+++W+ r +a F+++p++ ++++ a Niben101Scf05368g02002.1 644 VTRFREVLFHFSALFDMLEANVPRESPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAI 728 ********************************************************************************9 PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + + + ++e++++l+lgWk+r+++++S+W+ Niben101Scf05368g02002.1 729 EKVTSSYHKDFVIDENNKWLLLGWKGRTIYALSCWK 764 9999999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.201	367	744	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-112	393	764	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNDPR FENNFVPNNI 60 GGVQSVSNVP LSTSNIALTS DIGTEDEYNE DFDFSDTVLS YINQMLMEED MEDKTHMLQE 120 SLEFQAKEKS FYEALGKKYP PSPQKNLSIT YQNDEIPDEY CSGSLDNFRS NSNDSSGYLI 180 DTVINISNDL DSSYAQGLSV CNGTYSSISS SYSLINIIDG FLDSPVSPLH TPDIYNDSHP 240 IWNFRKGVEE ANKFLPTNIK LLDNVDINDL LPLEKRAESG CVAARVEKRD EGETSPTEPR 300 GRKNSHRDDK DLLEEERSSK QAAVYTESTV RSEEFDIVLL HSLGNGKEAL EAYRESLKNA 360 RMKTTVQNGQ SKGYNGGKGR SKKHSSKKEV IDLRTLLINC AQAVAADDCR SAIELLKQIR 420 LHSSPFGDSN QRLAHCFADG MEARLAGTGS QIYKALVNKK TSAADFLKAY HLYLASSPFR 480 KLSGFASNKT IMTKAGNAAR VHVIDFGILY GFQWPTLIQR ISAREGGPPK LRITGIEFPQ 540 PGFRPAERVE ETGRRLADYA QTFNVPFEYH AIAKKWETIR LEDLKLEKDE FLVVNCLYRF 600 KNLPDETVLT DSSRTLVLDL IRKINPDIFI HGIVNGAYSA PFFVTRFREV LFHFSALFDM 660 LEANVPRESP ERMLIEREIF GREALNVIAC EGWERVERPE TYKQWQVRNL RARFTQIPFE 720 REVMNRAIEK VTSSYHKDFV IDENNKWLLL GWKGRTIYAL SCWKPI

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNDPR FENNFVPNNI  60
GGVQSVSNVP LSTSNIALTS DIGTEDEYNE DFDFSDTVLS YINQMLMEED MEDKTHMLQE  120
SLEFQAKEKS FYEALGKKYP PSPQKNLSIT YQNDEIPDEY CSGSLDNFRS NSNDSSGYLI  180
DTVINISNDL DSSYAQGLSV CNGTYSSISS SYSLINIIDG FLDSPVSPLH TPDIYNDSHP  240
IWNFRKGVEE ANKFLPTNIK LLDNVDINDL LPLEKRAESG CVAARVEKRD EGETSPTEPR  300
GRKNSHRDDK DLLEEERSSK QAAVYTESTV RSEEFDIVLL HSLGNGKEAL EAYRESLKNA  360
RMKTTVQNGQ SKGYNGGKGR SKKHSSKKEV IDLRTLLINC AQAVAADDCR SAIELLKQIR  420
LHSSPFGDSN QRLAHCFADG MEARLAGTGS QIYKALVNKK TSAADFLKAY HLYLASSPFR  480
KLSGFASNKT IMTKAGNAAR VHVIDFGILY GFQWPTLIQR ISAREGGPPK LRITGIEFPQ  540
PGFRPAERVE ETGRRLADYA QTFNVPFEYH AIAKKWETIR LEDLKLEKDE FLVVNCLYRF  600
KNLPDETVLT DSSRTLVLDL IRKINPDIFI HGIVNGAYSA PFFVTRFREV LFHFSALFDM  660
LEANVPRESP ERMLIEREIF GREALNVIAC EGWERVERPE TYKQWQVRNL RARFTQIPFE  720
REVMNRAIEK VTSSYHKDFV IDENNKWLLL GWKGRTIYAL SCWKPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-48	376	765	1	379	Protein SCARECROW
5b3h_D	2e-48	376	765	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804922.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1U7YLH5	0.0	A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRING	XP_009804922.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein