PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05323g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 780aa    MW: 87018.1 Da    PI: 4.5537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05323g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06252271525
                               --SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                               +C ff+r G+C  G++C+F H
  Niben101Scf05323g02008.1 252 RCEFFSR-GWCIKGNSCRFLH 271
                               5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.291247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5248271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MPSPVAAVDP KADVELDEDD EEYEETEVEE EIEVEEEEEE EEEEEEEEEV EEEIEVEEEE  60
EEEIEVEEEV EEEEEEEGKG EEEKNEEKGQ ASVPLNVDDQ KDGSQVLEPS GLEQHLRSGF  120
STQQEPVANL PPHIPWIEDG NDSCRISNSD EARERKGGER THIESDVQAS GFEDGETNRK  180
RIQPFGQAVD AEILTDVSGK VAIDVQFTEG GDQEAVDDLK QTSPRLEVLK TRERSSSPAA  240
DSRGGSKRLA MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAMI KSKLANGKGL  300
QENGKRSVLD GSSDSVPSAV QSGENIQLRS DEESHMLMDG PSSIPEVRRE SLGCKPYLAG  360
YSTSSSPLLK DGSVHKNILH GGKRSSVLLS DSYQNTVVSS YASGLNNVNY KRSRSVHDNH  420
GFQVLNDSAD RLSHRCSSSR NVDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS  480
RIDLSRDTRR SSDYKTKVSS DNWEPSVPFR PSSFLSQIIG CPESLYDPLR DSIEQRNVGD  540
GPSKFSSSGK GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE  600
LSNNEADTAD TAVAHQEHIN TSSKADKLNL STELQHTRLR KKTKSEFERL GHGNEIDIDW  660
KTDRSVNKES RILKHFHAAL VEFIKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH  720
QVPGTAESIR QYLSVSQPKL AKLIECQKGT RRNIAGKNEK GYKERQKREG ERGMPGEIDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767961.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like, partial
TrEMBLA0A1U7VSM90.0A0A1U7VSM9_NICSY; protein FRIGIDA-ESSENTIAL 1-like
STRINGXP_009767961.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-19C3H family protein