PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05301g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 952aa MW: 104571 Da PI: 5.8474

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05301g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.4	3.3e-05	688	748	1	54
TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ +++ ++++ e Ak+l ++t++q k+W Nr+a+ Niben101Scf05301g00007.1 688 KRKRTIMNEKQISLMEKALMDepDMHRNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 748 79***************9834555567789999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-5	675	749	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.24	685	752	IPR001356	Homeobox domain
SMART	SM00389	2.9E-5	687	756	IPR001356	Homeobox domain
CDD	cd00086	6.26E-6	688	751	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MKKEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLV FYSLVILCTH SKVSNDMGLF HSTLVASSLY LLTVCISSQW HDLAQVLLAY 180 YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS 240 LCQQKSFRER LVKNKELSCK GGVLLLAQAV MHLDVSPLVT LSSSIIAAVS RLKSKVLSIL 300 LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SDKIYPKGHL 360 QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVEHGEF VSSWCSSDLP IREEDATLEY 420 DPFAAAGWVL DLFPFSDQSN ATSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI 480 CKEEKDLFLN KFVQCLRTKV SETPEGFKSI SDSQKAATVS RNLGSLLSHA ESLIPAFLNE 540 EDVQLLRVFI TQLESLTTPR ACGENRVQEA QNLGACLPLQ LREVAMDLNN RLNQLNSRVN 600 GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE 660 KINCNGPGDG REDEMAEASQ REEKQQRKRK RTIMNEKQIS LMEKALMDEP DMHRNKASLE 720 FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP 780 GSPVEDVGNL SAARENVQRV TGPAPTTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE 840 EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKLGESKAP QFLIKEATPI TIFAHRSSCS 900 KLIITGGIRG PHVGGLMNLS HAVTGLMPEL ENYPVLVKGD TILVACCGTI SG

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MKKEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLV FYSLVILCTH SKVSNDMGLF HSTLVASSLY LLTVCISSQW HDLAQVLLAY  180
YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS  240
LCQQKSFRER LVKNKELSCK GGVLLLAQAV MHLDVSPLVT LSSSIIAAVS RLKSKVLSIL  300
LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SDKIYPKGHL  360
QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVEHGEF VSSWCSSDLP IREEDATLEY  420
DPFAAAGWVL DLFPFSDQSN ATSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI  480
CKEEKDLFLN KFVQCLRTKV SETPEGFKSI SDSQKAATVS RNLGSLLSHA ESLIPAFLNE  540
EDVQLLRVFI TQLESLTTPR ACGENRVQEA QNLGACLPLQ LREVAMDLNN RLNQLNSRVN  600
GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE  660
KINCNGPGDG REDEMAEASQ REEKQQRKRK RTIMNEKQIS LMEKALMDEP DMHRNKASLE  720
FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP  780
GSPVEDVGNL SAARENVQRV TGPAPTTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE  840
EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKLGESKAP QFLIKEATPI TIFAHRSSCS  900
KLIITGGIRG PHVGGLMNLS HAVTGLMPEL ENYPVLVKGD TILVACCGTI SG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225558.1	0.0	PREDICTED: nodulin homeobox
Refseq	XP_019225559.1	0.0	PREDICTED: nodulin homeobox
Refseq	XP_019225560.1	0.0	PREDICTED: nodulin homeobox
Refseq	XP_019225561.1	0.0	PREDICTED: nodulin homeobox
TrEMBL	A0A314KT92	0.0	A0A314KT92_NICAT; Nodulin homeobox
STRING	XP_009778419.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7844	5	7