PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05294g00039.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 607aa    MW: 66418.3 Da    PI: 4.8312
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05294g00039.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.3e-061474755
                              --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                  Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                              f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  Niben101Scf05294g00039.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                              666666777777764325567777777888888888888887799*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-9475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-61379IPR009057Homeodomain-like
PROSITE profilePS500718.9241377IPR001356Homeobox domain
CDDcd000860.005421375No hitNo description
PfamPF167192.0E-41159286IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTQSV PQSDQAMVRT PAKSSASPVP QSDPAALRII  120
PQASQPIPSP QVKSMPQAPQ PLPAPSVQNL GRSASDNIQM EFEAKSARDG AWYDVASFLS  180
HRSVETADPE VLVRFAGFGA EEDEWVNVRK HVRQRSLPCE SSECVAVLPG DLILCFQEGK  240
EQALYFDAHV LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV PLRKVCRRPE TDYRLQQLNA  300
ESLKQQKIGN DITRGNATKV YPPAETTQKA QTESRIKPAE PTQKQPAPED TTNTVPNVAP  360
MQLQKSSTDS LTGNTLAETT PQRMEEMKEK PVAGTTEVPR EEKREMPLAE RMNEAPAETA  420
EKSPAETTLK PPAASMSKPD EAPEEPPTET TLKPLSALTT KPDEAPEQPP AETTLKPLAP  480
SASTPDEAPE KYPVETPLKP PAASTSKPDE EPGKSPVETP LKPPAASTSK PDEEPEQPPS  540
ETPLKPPAAS TLKPDEEPEQ PPAETTLKPQ ADSTSKLAEA PEEQPKEEEH VDAGPTTSSM  600
DHDDASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-481602904134SHH1 SAWADEE
4iur_B6e-481602904134SHH1 SAWADEE
4iut_A6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-481602904134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758415.10.0PREDICTED: proteoglycan 4-like
TrEMBLA0A1U7V9C70.0A0A1U7V9C7_NICSY; proteoglycan 4-like
STRINGXP_009758415.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-127sequence-specific DNA binding transcription factors;sequence-specific DNA binding