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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05272g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 202aa MW: 21864 Da PI: 7.1735 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.5e-39 | 18 | 78 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGg++rkn k+s Niben101Scf05272g02010.1 18 EQEILKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPVGGASRKNTKRS 78 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 14 | 70 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.807 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MNMQDPSVYS EINPQFPEQE ILKCPRCDSI NTKFCYYNNY NLSQPRHFCK NCKRYWTKGG 60 TLRNIPVGGA SRKNTKRSSS SNSKRSSTTS SLSSSSAAQP KSEPFPLPVV AVIDQNSPIH 120 GPFSSLLTST GPEIGSLFEG LKPNVSDSGL VSGSDAAAQS ENNNNTDEYL CPVQSGEDSN 180 CWNGGNGWTD LAIYSAPGSS FQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235508.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A1J6K6P9 | 1e-122 | A0A1J6K6P9_NICAT; Dof zinc finger protein dof1.7 | ||||
STRING | XP_009758019.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-35 | DOF zinc finger protein 1 |