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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05252g02009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 484aa MW: 52508.3 Da PI: 6.6462 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31 | 5.4e-10 | 162 | 217 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l + l+ Niben101Scf05252g02009.1 162 KRAKRILANRQSAARSKERKARYISELESKVQTLQTEATTLSAQLTLFQRDTTGLT 217 9****************************************999887766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-16 | 158 | 222 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.668 | 160 | 223 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 162 | 216 | No hit | No description |
SuperFamily | SSF57959 | 6.54E-11 | 162 | 213 | No hit | No description |
Pfam | PF00170 | 1.7E-8 | 162 | 210 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.58E-22 | 163 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MQEPSHPNSV KLPNQPLSSF SAAAFRPSHH RRAHSEVNFR LPEDLDLASD PFDAPAGSFE 60 EIGSEDDFFS TYMDIEKLGS GGGPNSGSDA AAGGLEKAGG SGGSSRVGAE SSDGEKSMML 120 KPRHRHSNSV DSSSSLLLSE TIEAKKAMAP DKLAELWTID PKRAKRILAN RQSAARSKER 180 KARYISELES KVQTLQTEAT TLSAQLTLFQ RDTTGLTNEN TELKLRLQAM EQQAQLRDAL 240 NEALKQEVER LKMATGQISA SSDAYNLGMQ QISYNRPAFF PHQPQSGPSE PPNIQMPQFH 300 TLQGSMSNPR HPLLAGHHAQ ALGDAMQQDP LGCFQGLHIN SRGSHLVKTE APSISASESS 360 TLNEALKQEV ERLKIATGQI SASSDSYNSG MQQISYNRPT FFPHQPQPGP SEPPNTQMPQ 420 FHTLQGSMSN PRHPLLAGHA QALTDTMQQD PLGCFQGLHI NSRGSHLVKT EAPSISASES 480 SSTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253528.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | O22873 | 1e-104 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A1J6IR67 | 0.0 | A0A1J6IR67_NICAT; Transcription factor rf2b | ||||
STRING | XP_009606784.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3425 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 6e-98 | bZIP family protein |
Publications ? help Back to Top | |||
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