PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05201g06021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 303aa MW: 33759 Da PI: 9.8729

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05201g06021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.2e-10	38	81	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ k rr+++NReAAr+sR+RKka++++Le +L++ ++L Niben101Scf05201g06021.1 38 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 81 567899*************************9888888777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-8	34	84	No hit	No description
SMART	SM00338	1.3E-8	37	100	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	39	83	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-7	40	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.66E-7	41	84	No hit	No description
PROSITE pattern	PS00036	0	44	59	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-28	124	195	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MADISPSTST DADTEDKNRF LNSQQLGAVA SDGSDRTRDQ KTLRRLAQNR EAARKSRLRK 60 KAYVQQLESS RMKLTQLEQE LQRARQQGIF ISGSGDQSQS MSGNGALAFD VEYARWLEEQ 120 NRRINELRGA VNSHAGDGEL RIIVDGILAH YDDIFRIKGD AAKSDVFHIL SGMWKTPAER 180 CFLWLGGFRL SELLKSSQQA EDALSQGMEA LQQSLAETLA GSLGPSSSSG NVANYMGQMA 240 MAMGKLGTLE GFIRQADNLR QQTLQQMHRI LTTRQSARAL LAISDYFSRL RALSSLWLAR 300 PRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312154.1	0.0	transcription factor TGA2-like
Refseq	XP_009794636.1	0.0	PREDICTED: transcription factor TGA2-like
Refseq	XP_016452354.1	0.0	PREDICTED: transcription factor TGA2-like
Refseq	XP_016509560.1	0.0	PREDICTED: transcription factor TGA2-like
Refseq	XP_018622908.1	0.0	PREDICTED: transcription factor TGA2.2-like
Refseq	XP_019232089.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q41558	1e-166	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A1J6KFU5	0.0	A0A1J6KFU5_NICAT; Transcription factor tga2
TrEMBL	A0A1U7XYD3	0.0	A0A1U7XYD3_NICSY; transcription factor TGA2-like
TrEMBL	Q9SQK1	0.0	Q9SQK1_TOBAC; BZIP transcription factor
STRING	XP_009794636.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-129	TGACG motif-binding factor 6