 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf05201g05003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HSF |
| Protein Properties |
Length: 245aa MW: 28658.5 Da PI: 8.4788 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf05201g05003.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 79.5 | 5.4e-25 | 20 | 105 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86
Fl+k+y++++de+ ++++sw en+++fvv+++ efak++Lp+yFkh+nf+SF gFkk+ ++ weF++ +F
Niben101Scf05201g05003.1 20 FLTKTYQLVDDESSNHIVSWGENETTFVVWKPPEFAKHLLPNYFKHNNFSSF-------GFKKIVPDK---------WEFANGNF 88
9**************************************************9.......9*****999.........******** PP
XXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 87 kkgkkellekikrkkse 103
kkg+k ll++i+r+ks+
Niben101Scf05201g05003.1 89 KKGQKYLLCEIQRRKST 105
**************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MSSSSVTVQD CERTIMAAPF LTKTYQLVDD ESSNHIVSWG ENETTFVVWK PPEFAKHLLP 60
NYFKHNNFSS FGFKKIVPDK WEFANGNFKK GQKYLLCEIQ RRKSTTQQLH HLKPYHENNT 120
KNIFYQPKTQ NNPSTNDILL LTLTLDNQRL RKRNNFLSSE LAHMKNLYND IINFIQNQVK 180
PVDQKFNLFS LNEGLNLRIN DHCLDHQVNT EDEEPKSSSV KLFGVSLCGK KRLHHQMIDQ 240
EVLEC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5d8k_B | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
| 5d8l_B | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
| 5d8l_D | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
| 5d8l_F | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
| 5d8l_H | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
