PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05201g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 514aa MW: 58124.2 Da PI: 8.1787

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05201g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+e ++yp+ e++++LA++ gLte+q++ WF+ rR k+k+ Niben101Scf05201g01002.1 20 KKRIIKTRAQVEALEKLYEVHKYPTDEMKADLAESSGLTEKQISGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-20	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-16	10	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.309	16	76	IPR001356	Homeobox domain
SMART	SM00389	4.9E-18	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.45E-15	20	75	No hit	No description
Pfam	PF00046	5.0E-15	20	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEDLCEMHSE DDNGHPEKNK KRIIKTRAQV EALEKLYEVH KYPTDEMKAD LAESSGLTEK 60 QISGWFCHRR LKDKRLSNGE ISVNGRKDHS NGVIQDHGSG FRQDSCGSTK QADDKRFDHR 120 EVESRRLTGP EFSTADVTYE VGIHFRGKSN RMDDTSSRSS SSLRNECFSH NAESYDIATS 180 RYISQNLPTN FKGVKQKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL 240 PPGAFESSVP NPVNDPNYST EPVPNCSPDM SNVYRRSNGY GSNSKSNSHG SDLDGLRFKR 300 KANSALPEYH FNLKPKPNSS EHNEYPKRNS SLDTNEGSAI KIAVDSRDSC KFMPKHGRAE 360 IRASTGSSNG LRNSYVGKVN GEQLKPRLNS HSEVRLKGVE KEHFDRKPSD YKGINYHNFE 420 GRELPKIVEK DHISGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH PEYLRIAPAL 480 EIPLQTNHRI RTVAEMRHSF SEDEETEESS SFDN

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEDLCEMHSE DDNGHPEKNK KRIIKTRAQV EALEKLYEVH KYPTDEMKAD LAESSGLTEK  60
QISGWFCHRR LKDKRLSNGE ISVNGRKDHS NGVIQDHGSG FRQDSCGSTK QADDKRFDHR  120
EVESRRLTGP EFSTADVTYE VGIHFRGKSN RMDDTSSRSS SSLRNECFSH NAESYDIATS  180
RYISQNLPTN FKGVKQKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL  240
PPGAFESSVP NPVNDPNYST EPVPNCSPDM SNVYRRSNGY GSNSKSNSHG SDLDGLRFKR  300
KANSALPEYH FNLKPKPNSS EHNEYPKRNS SLDTNEGSAI KIAVDSRDSC KFMPKHGRAE  360
IRASTGSSNG LRNSYVGKVN GEQLKPRLNS HSEVRLKGVE KEHFDRKPSD YKGINYHNFE  420
GRELPKIVEK DHISGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH PEYLRIAPAL  480
EIPLQTNHRI RTVAEMRHSF SEDEETEESS SFDN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254507.1	0.0	PREDICTED: uncharacterized protein LOC109233181 isoform X2
TrEMBL	A0A1J6HZX0	0.0	A0A1J6HZX0_NICAT; Homeobox-ddt domain protein rlt1
STRING	XP_009630181.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-64	HB-other family protein