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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf05190g03007.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
C2H2 |
Protein Properties |
Length: 440aa MW: 49018.1 Da PI: 8.6468 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf05190g03007.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.9 | 4e-06 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cgk F r nL+ H r H
Niben101Scf05190g03007.1 27 FVCEICGKGFQRDQNLQLHRRGH 49
89*******************88 PP
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2 | zf-C2H2 | 13.6 | 0.0002 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Niben101Scf05190g03007.1 103 WKCEKCSKRYAVQSDWKAHSKTC 125
58*****************9998 PP
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3 | zf-C2H2 | 10.7 | 0.0017 | 133 | 151 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg+ Fsr++++++H +
Niben101Scf05190g03007.1 133 DCGTIFSRRDSFVTHRAFC 151
8**************8765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MTEEVISNPE AEVIALSPKT LMATNRFVCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTS 60 KEVRKRVYVC PEKSCVHHHA SRALGDLTGI KKHYCRKHGE KKWKCEKCSK RYAVQSDWKA 120 HSKTCGTREY RCDCGTIFSR RDSFVTHRAF CDALAEETAR VTAASNMHNP LVGNNINYHF 180 IGSPLGPNMA QHFSSLFKPI STNNENSDPI MIRDQLSLWN MGQVSQQQEI IGNNNLQEIH 240 QIGPLIETSA AAVYDTNTLP APRSNPLPVN YNHVNWEQLT NTSSANITVP SLFSTQHQSH 300 QQITTSSIAT MSATALLQKA AQIGATTTTT DPSFLGNNFG MNNCNGKNNS VQFQEVNNNK 360 LCGFYVTTTN NSITTSLGSE VDQGSVTEFS TLNQLQMNNP PPKRLHIQTR EDSVTGGQTR 420 DFLGVGVQSI CHPSSINGWI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |